Evidence map›Paper›PMID 25209234›Full record

ArticleNucleic acids research2014

The methyltransferase domain of dengue virus protein NS5 ensures efficient RNA synthesis initiation and elongation by the polymerase domain.

Supanee Potisopon, Stéphane Priet, Axelle Collet, Etienne Decroly, Bruno Canard, Barbara Selisko

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
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  6. Review
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  9. Article
  10. Review
  11. Exploring the Targets of Dengue Virus and Designs of Potential Inhibitors.Combinatorial chemistry & high throughput screening · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Innate and adaptive immune evasion by dengue virus.Frontiers in cellular and infection microbiology · 2022
    Review
  20. Aptamers isolated against mosquito-borne pathogens.World journal of microbiology & biotechnology · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Supanee PotisoponAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France.
Stéphane PrietAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France.
Axelle ColletAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France.
Etienne DecrolyAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France.
Bruno CanardAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France Barbara.Selisko@afmb.univ-mrs.fr.
Barbara SeliskoAix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France CNRS, AFMB UMR 7257, 13288 Marseille, France Barbara.Selisko@afmb.univ-mrs.fr.
Aix-Marseille Université · FRArchitecture et Fonction des Macromolécules Biologiques · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral RNA-dependent RNA polymerases (RdRps) responsible for the replication of single-strand RNA virus genomes exert their function in the context of complex replication machineries. Within these replication complexes the polymerase activity is often highly regulated by RNA elements, proteins or other domains of multi-domain polymerases. Here, we present data of the influence of the methyltransferase domain (NS5-MTase) of dengue virus (DENV) protein NS5 on the RdRp activity of the polymerase domain (NS5-Pol). The steady-state polymerase activities of DENV-2 recombinant NS5 and NS5-Pol are compared using different biochemical assays allowing the dissection of the de novo initiation, transition and elongation steps of RNA synthesis. We show that NS5-MTase ensures efficient RdRp activity by stimulating the de novo initiation and the elongation phase. This stimulation is related to a higher affinity of NS5 toward the single-strand RNA template indicating NS5-MTase either completes a high-affinity RNA binding site and/or promotes the correct formation of the template tunnel. Furthermore, the NS5-MTase increases the affinity of the priming nucleotide ATP upon de novo initiation and causes a higher catalytic efficiency of the polymerase upon elongation. The complex stimulation pattern is discussed under the perspective that NS5 adopts several conformations during RNA synthesis.

Indexed as

Transcription Elongation, GeneticTranscription Initiation, GeneticProtein Structure, TertiaryRNARNA-Dependent RNA PolymeraseViral Nonstructural ProteinsNS5 protein, dengue virusRNARNA-Dependent RNA PolymeraseRNA primersViral Nonstructural Proteins

Identifiers

PMID25209234
PMCPMC4191377
OpenAlexW2169543500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.