Evidence map›Paper›PMID 25208887›Full record

SynthesisBlood2014

Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels.

Qianyi Ma, Ayse B Ozel, Shweta Ramdas, Beth McGee, Rami Khoriaty, David Siemieniak, Hong-Dong Li, Yuanfang Guan, Lawrence C Brody, James L Mills and 4 more

Registry-linked trialOpen access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03797495 (Hypoplasminogenemia), which is not on this map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03797495 recruitingnot on this mapstarted 2018, after this paper: background citation

Hypoplasminogenemia: An International RetroSpecTive and PrOspective CohoRt StudY (HISTORY)

TypeobservationalSponsorIndiana Hemophilia &Thrombosis Center, Inc.Ran2018 to 2029Enrolled100ConditionsPlasminogen Deficiency
3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Functions of the plasminogen receptor Plg-RJournal of thrombosis and haemostasis : JTH · 2020
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Genetic variants inBlood advances · 2017
    Article
  14. Deficiency of plasminogen receptor, Plg-RJournal of thrombosis and haemostasis : JTH · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Qianyi MaDepartment of Human Genetics.
Ayse B OzelDepartment of Human Genetics.
Shweta RamdasDepartment of Human Genetics.
Beth McGeeHoward Hughes Medical Institute.
Rami KhoriatyDepartment of Internal Medicine, and.
David SiemieniakHoward Hughes Medical Institute.
Hong-Dong LiDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI;
Yuanfang GuanDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI;
Lawrence C BrodyNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD;
James L MillsEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD;
Anne M MolloySchool of Medicine, Trinity College, Dublin, Ireland; and.
David GinsburgDepartment of Human Genetics, Howard Hughes Medical Institute, Department of Internal Medicine, and Department of Pediatrics and Communicable Disease, University of Michigan, Ann Arbor, MI.
Jun Z LiDepartment of Human Genetics.
Karl C DeschDepartment of Pediatrics and Communicable Disease, University of Michigan, Ann Arbor, MI.
University of Michigan–Ann Arbor · USHoward Hughes Medical Institute · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USNational Institutes of Health · USTrinity College Dublin · IE

Funding

The contribution folate and vitamin B12 genes to disease.ZIAHG000167 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BRODY, LAWRENCE C · 2009 to 2025
$17.6M
MOLECULAR GENETIC STUDY OF VONWILLEBRAND FACTORR37HL039693 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID · 2001 to 2010
$3.7M
NICHD Health Research Board Of Ireland Neural Tube Defects StudyZIAHD002502 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MILLS, JAMES · 2009 to 2022
$2.9M
Molecular Genetic Study of von Willebrand FactorR01HL039693 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID · 1989 to 2016
$2.4M
Identifying novel genetic risk factors for venous thromboembolism (VTE)R01HL112642 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID, LI, JUN · 2012 to 2015
$1.5M
Howard Hughes Medical InstituteIntramural NIH HHSNHLBI NIH HHS R01 HL039693NHLBI NIH HHS R01 HL112642NHLBI NIH HHS R01HL112642NHLBI NIH HHS R37 HL039693NHLBI NIH HHS R37HL039693
6 · The paper itself

Abstract

Plasminogen is the precursor of the serine protease plasmin, a central enzyme of the fibrinolytic system. Plasma levels of plasminogen vary by almost 2-fold among healthy individuals, yet little is known about its heritability or genetic determinants in the general population. In order to identify genetic factors affecting the natural variation of plasminogen levels, we performed a genome-wide association study and linkage analysis in a sample of 3456 young healthy individuals who participated in the Genes and Blood Clotting Study (GABC) or the Trinity Student Study (TSS). Heritability of plasminogen levels was 48.1% to 60.0%. Tobacco smoking and female sex were associated with higher levels of plasminogen. In the meta-analysis, 11 single-nucleotide polymorphisms (SNPs) in 2 regions reached genome-wide significance (P < 5.0E-8). Of these, 9 SNPs were near the PLG or LPA genes on Chr6q26, whereas 2 were on Chr19q13 and 5' upstream of SIGLEC14. These 11 SNPs represented 4 independent signals and collectively explained 6.8% of plasminogen level variation in the study populations. The strongest association was observed for a nonsynonymous SNP in the PLG gene (R523W). Individuals bearing an additional copy of this allele had an average decrease of 13.4% in plasma plasminogen level.

Indexed as

AdolescentAdultApolipoproteins ACohort StudiesFemaleGene DeletionGenetic LinkageGenetic VariationGenome-Wide Association StudyHumansLectinsMalePlasminogenPolymorphism, Single NucleotideReceptors, Cell SurfaceSmokingApolipoproteins ALectinsPlasminogenReceptors, Cell SurfaceSIGLEC14 protein, human

Identifiers

PMID25208887
PMCPMC4231423
OpenAlexW2113501953

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.