Evidence map›Paper›PMID 25208554›Full record

ArticleNature communications2014

Circadian rhythm reprogramming during lung inflammation.

Jeffrey A Haspel, Sukrutha Chettimada, Rahamthulla S Shaik, Jen-Hwa Chu, Benjamin A Raby, Manuela Cernadas, Vincent Carey, Vanessa Process, G Matthew Hunninghake, Emeka Ifedigbo and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 1 synthesis or guideline pooled it, 263 citations in OpenAlex.

  1. Pooled it
  2. CircadiOmics: bioinformatics platform for circadian rhythms.Bioinformatics (Oxford, England) · 2026
    Article
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  20. Metabolomic Analysis of Cauda Epididymal Fluid in Yaks and Cattle.Animals : an open access journal from MDPI · 2025
    Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Jeffrey A HaspelDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Sukrutha ChettimadaDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Rahamthulla S ShaikDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Jen-Hwa ChuChanning Division of Network Medicine, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, Massachusetts 02215, USA.
Benjamin A Raby1] Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA [2] Channing Division of Network Medicine, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, Massachusetts 02215, USA.
Manuela CernadasDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Vincent CareyChanning Division of Network Medicine, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, Massachusetts 02215, USA.
Vanessa ProcessChanning Division of Network Medicine, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, Massachusetts 02215, USA.
G Matthew HunninghakeDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Emeka IfedigboDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
James A LedererDepartment of Surgery, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Joshua EnglertDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Ashley PeltonDepartment of Pathology, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Anna CoronataDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Laura E FredenburghDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, Massachusetts 02215, USA.
Augustine M K ChoiDepartment of Medicine, New York Presbyterian/Weill Cornell Medical Center, 555 East 68 Street, New York, New York, 10065, USA.
Brigham and Women's Hospital · USPresbyterian Hospital · US

Funding

Mesenchymal Stromal Cell Conditioning by Carbon MonoxideP01HL108801 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SERHAN, CHARLES NICHOLAS · 2011 to 2015
$13.8M
Genetics and Gene Expression Profiling in AsthmaR01HL086601 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER · 2007 to 2015
$6.8M
The Role of HEME Oxygenase in Hyperoxic Lung InjuryR01HL055330 · NHLBI · YALE UNIVERSITY · PI CHOI, AUGUSTINE M, CHOI, MARY E · 1998 to 2021
$6.6M
Interstitial Lung Abnormalities: Defining the Phenotype, Causes, and Consequences.R01HL111024 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUNNINGHAKE, GARY MATTHEW · 2013 to 2022
$6.4M
Heme oxygenase-1: Regulation and Function in CaveolaeR01HL079904 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHOI, MARY E · 2005 to 2014
$2.9M
Clock Gene Control of Viral Infection and AsthmaR01HL135846 · NHLBI · WASHINGTON UNIVERSITY · PI HASPEL, JEFFREY ADAM · 2017 to 2021
$2.8M
Role of Macroautophagy and Circadian Clock Disruption in Sepsis PathogenesisK08GM102694 · NIGMS · WASHINGTON UNIVERSITY · PI HASPEL, JEFFREY ADAM · 2012 to 2015
$802k
HEME OXYGENASE AND HYPEROXIC LUNG INJURYR29HL055330 · NHLBI · YALE UNIVERSITY · PI CHOI, AUGUSTINE M · 1996 to 1998
–
NHLBI NIH HHS HL055330NHLBI NIH HHS HL079904NHLBI NIH HHS HL108801NHLBI NIH HHS P01 HL108801NHLBI NIH HHS R01 HL055330NHLBI NIH HHS R01 HL079904NHLBI NIH HHS R01 HL086601NHLBI NIH HHS R01 HL111024NHLBI NIH HHS R01 HL135846NIGMS NIH HHS 5K08GM102694NIGMS NIH HHS K08 GM102694
6 · The paper itself

Abstract

Circadian rhythms are known to regulate immune responses in healthy animals, but it is unclear whether they persist during acute illnesses where clock gene expression is disrupted by systemic inflammation. Here we use a genome-wide approach to investigate circadian gene and metabolite expression in the lungs of endotoxemic mice and find that novel cellular and molecular circadian rhythms are elicited in this setting. The endotoxin-specific circadian programme exhibits unique features, including a divergent group of rhythmic genes and metabolites compared with the basal state and a distinct periodicity and phase distribution. At the cellular level, endotoxin treatment also alters circadian rhythms of leukocyte counts within the lung in a bmal1-dependent manner, such that granulocytes rather than lymphocytes become the dominant oscillating cell type. Our results show that inflammation produces a complex re-organization of cellular and molecular circadian rhythms that are relevant to early events in lung injury.

Indexed as

AnimalsCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsCLOCK ProteinsEndotoxinsGene Expression RegulationGranulocytesLeukocyte CountLungLymphocytesMicePneumoniaRNA, MessengerCircadian Rhythm Signaling Peptides and ProteinsCLOCK ProteinsEndotoxinsRNA, Messenger

Identifiers

PMID25208554
PMCPMC4162491
OpenAlexW2128804564

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.