Evidence map›Paper›PMID 25205583›Full record

ArticleJournal of experimental botany2014

Arabidopsis homolog of trithorax1 (ATX1) is required for cell production, patterning, and morphogenesis in root development.

Selene Napsucialy-Mendivil, Raúl Alvarez-Venegas, Svetlana Shishkova, Joseph G Dubrovsky

Abstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
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  5. Identification of thePlants (Basel, Switzerland) · 2024
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  14. Review
  15. Article
  16. Article
  17. The Epigenetic Faces of ULTRAPETALA1.Frontiers in plant science · 2021
    Review
  18. Article
  19. AtHB7/12 Regulate Root Growth in Response to Aluminum Stress.International journal of molecular sciences · 2020
    Article
  20. Genome-Wide Identification of Epigenetic Regulators inInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Selene Napsucialy-MendivilDepartamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Apartado Postal 510-3, 62250 Cuernavaca, Morelos, México.
Raúl Alvarez-VenegasDepartamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados, Unidad Irapuato, Irapuato, Gto., CP 36821, México.
Svetlana ShishkovaDepartamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Apartado Postal 510-3, 62250 Cuernavaca, Morelos, México.
Joseph G DubrovskyDepartamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Apartado Postal 510-3, 62250 Cuernavaca, Morelos, México jdubrov@ibt.unam.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis homolog of trithorax1 (ATX1/SDG27), a known regulator of flower development, encodes a H3K4histone methyltransferase that maintains a number of genes in an active state. In this study, the role of ATX1 in root development was evaluated. The loss-of-function mutant atx1-1 was impaired in primary root growth. The data suggest that ATX1 controls root growth by regulating cell cycle duration, cell production, and the transition from cell proliferation in the root apical meristem (RAM) to cell elongation. In atx1-1, the quiescent centre (QC) cells were irregular in shape and more expanded than those of the wild type. This feature, together with the atypical distribution of T-divisions, the presence of oblique divisions, and the abnormal cell patterning in the RAM, suggests a lack of coordination between cell division and cell growth in the mutant. The expression domain of QC-specific markers was expanded both in the primary RAM and in the developing lateral root primordia of atx1-1 plants. These abnormalities were independent of auxin-response gradients. ATX1 was also found to be required for lateral root initiation, morphogenesis, and emergence. The time from lateral root initiation to emergence was significantly extended in the atx1-1 mutant. Overall, these data suggest that ATX1 is involved in the timing of root development, stem cell niche maintenance, and cell patterning during primary and lateral root development. Thus, ATX1 emerges as an important player in root system architecture.

Indexed as

Body PatterningArabidopsisArabidopsis ProteinsCell ProliferationGene Expression Regulation, PlantHistone-Lysine N-MethyltransferaseIndoleacetic AcidsMeristemMutationPlant RootsStem Cell NicheTime FactorsTranscription FactorsArabidopsis ProteinsAt2g31650 protein, ArabidopsisHistone-Lysine N-MethyltransferaseIndoleacetic AcidsTranscription FactorsArabidopsislateral root developmentpatterningroot apical meristemroot developmentroot morphogenesisroot system.

Identifiers

PMID25205583
PMCPMC4246177

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.