Evidence map›Paper›PMID 25204982›Full record

ArticleBMC systems biology2014

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters.

Thomas Kelder, Lars Verschuren, Ben van Ommen, Alain J van Gool, Marijana Radonjic

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Thomas KelderTNO, Research Group Microbiology & Systems Biology, Zeist, The Netherlands. thomas@edgeleap.com.
Lars VerschurenTNO, Research Group Microbiology & Systems Biology, Zeist, The Netherlands. lars.verschuren@tno.nl.
Ben van OmmenTNO, Research Group Microbiology & Systems Biology, Zeist, The Netherlands. ben.vanommen@tno.nl.
Alain J van GoolTNO, Research Group Microbiology & Systems Biology, Zeist, The Netherlands. alain.vangool@tno.nl.
Marijana RadonjicTNO, Research Group Microbiology & Systems Biology, Zeist, The Netherlands. marijana@edgeleap.com.
Netherlands Organisation for Applied Scientific Research · NLNederlands Instituut Voor Zuivel Oonderzoek · NLRadboud University Nijmegen · NLResearch Institute for Knowledge Systems · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMultifactorial diseases such as type 2 diabetes mellitus (T2DM), are driven by a complex network of interconnected mechanisms that translate to a diverse range of complications at the physiological level. To optimally treat T2DM, pharmacological interventions should, ideally, target key nodes in this network that act as determinants of disease progression.

resultsWe set out to discover key nodes in molecular networks based on the hepatic transcriptome dataset from a preclinical study in obese LDLR-/- mice recently published by Radonjic et al. Here, we focus on comparing efficacy of anti-diabetic dietary (DLI) and two drug treatments, namely PPARA agonist fenofibrate and LXR agonist T0901317. By combining knowledge-based and data-driven networks with a random walks based algorithm, we extracted network signatures that link the DLI and two drug interventions to dyslipidemia-related disease parameters.

conclusionsThis study identified specific and prioritized sets of key nodes in hepatic molecular networks underlying T2DM, uncovering pathways that are to be modulated by targeted T2DM drug interventions in order to modulate the complex disease phenotype.

Indexed as

Disease ProgressionModels, BiologicalAnimalsBenzenesulfonamidesDiabetes Mellitus, Type 2FenofibrateFluorocarbonsHydrocarbons, FluorinatedLiverMiceMice, KnockoutReceptors, LDLSignal TransductionSulfonamidesTranscriptomeBenzenesulfonamidesFenofibrateFluorocarbonsHydrocarbons, FluorinatedReceptors, LDLSulfonamidesT0901317

Identifiers

PMID25204982
PMCPMC4363943
OpenAlexW2139102592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.