Evidence map›Paper›PMID 25203555›Full record

ArticlePLoS biology2014

Fission yeast Pxd1 promotes proper DNA repair by activating Rad16XPF and inhibiting Dna2.

Jia-Min Zhang, Xiao-Man Liu, Yue-He Ding, Liang-Yao Xiong, Jing-Yi Ren, Zhi-Xiong Zhou, Hai-Tao Wang, Mei-Jun Zhang, Yang Yu, Meng-Qiu Dong and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Fission Yeast Mating-Type Switching Motto: "One-for-Two" and "Two-for-One".Microbiology and molecular biology reviews : MMBR · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jia-Min ZhangNational Institute of Biological Sciences, Beijing, China; Graduate School of Peking Union Medical College, Beijing, China.
Xiao-Man LiuNational Institute of Biological Sciences, Beijing, China.
Yue-He DingNational Institute of Biological Sciences, Beijing, China.
Liang-Yao XiongNational Institute of Biological Sciences, Beijing, China.
Jing-Yi RenNational Institute of Biological Sciences, Beijing, China.
Zhi-Xiong ZhouNational Institute of Biological Sciences, Beijing, China.
Hai-Tao WangNational Institute of Biological Sciences, Beijing, China.
Mei-Jun ZhangNational Institute of Biological Sciences, Beijing, China.
Yang YuNational Institute of Biological Sciences, Beijing, China.
Meng-Qiu DongNational Institute of Biological Sciences, Beijing, China.
Li-Lin DuNational Institute of Biological Sciences, Beijing, China; Graduate School of Peking Union Medical College, Beijing, China.
National Institute of Biological Sciences, Beijing · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNPeking Union Medical College Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structure-specific nucleases play crucial roles in many DNA repair pathways. They must be precisely controlled to ensure optimal repair outcomes; however, mechanisms of their regulation are not fully understood. Here, we report a fission yeast protein, Pxd1, that binds to and regulates two structure-specific nucleases: Rad16XPF-Swi10ERCC1 and Dna2-Cdc24. Strikingly, Pxd1 influences the activities of these two nucleases in opposite ways: It activates the 3' endonuclease activity of Rad16-Swi10 but inhibits the RPA-mediated activation of the 5' endonuclease activity of Dna2. Pxd1 is required for Rad16-Swi10 to function in single-strand annealing, mating-type switching, and the removal of Top1-DNA adducts. Meanwhile, Pxd1 attenuates DNA end resection mediated by the Rqh1-Dna2 pathway. Disabling the Dna2-inhibitory activity of Pxd1 results in enhanced use of a break-distal repeat sequence in single-strand annealing and a greater loss of genetic information. We propose that Pxd1 promotes proper DNA repair by differentially regulating two structure-specific nucleases.

Indexed as

DNA RepairGene Expression Regulation, FungalCell Cycle ProteinsDNA-Binding ProteinsDNA DamageDNA, FungalDNA HelicasesDNA Topoisomerases, Type IFlap EndonucleasesProtein BindingSchizosaccharomycesSchizosaccharomyces pombe ProteinsSignal TransductionCdc24 protein, S pombeCell Cycle ProteinsDna2 protein, S pombeDNA-Binding ProteinsDNA, FungalDNA HelicasesDNA Topoisomerases, Type IFlap EndonucleasesRAD16 protein, S pombeRqh1 protein, S pombeSchizosaccharomyces pombe ProteinsSWI10 protein, S pombe

Identifiers

PMID25203555
PMCPMC4159138
OpenAlexW2109007779

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.