Evidence map›Paper›PMID 25203297›Full record

ArticleNature communications2014

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts.

Thomas D Otto, Julian C Rayner, Ulrike Böhme, Arnab Pain, Natasha Spottiswoode, Mandy Sanders, Michael Quail, Benjamin Ollomo, François Renaud, Alan W Thomas and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
22.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 134 citations in OpenAlex.

  1. Trial
  2. Towards an evolutionary baseline model ofbioRxiv : the preprint server for biology · 2025
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  6. Malaria Genomics, Vaccine Development, and Microbiome.Pathogens (Basel, Switzerland) · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Molecular Identification ofPathogens (Basel, Switzerland) · 2021
    Article
  12. Review
  13. Proteome size reduction in Apicomplexans is linked with loss of DNA repair and host redundant pathways.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  14. Merozoite Proteins Discovered by qRT-PCR-Based Transcriptome Screening ofFrontiers in cellular and infection microbiology · 2021
    Article
  15. Calcium in the Backstage of Malaria Parasite Biology.Frontiers in cellular and infection microbiology · 2021
    Review
  16. Structure of theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. Ape Origins of Human Malaria.Annual review of microbiology · 2020
    Review
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 5 countries.

Thomas D OttoParasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Julian C RaynerParasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Ulrike BöhmeParasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Arnab Pain1] Parasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK [2] Biological and Environmental Sciences and Engineering (BESE) Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Natasha Spottiswoode1] National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland 20852, USA [2] Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DS, UK.
Mandy SandersParasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Michael QuailParasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK.
Benjamin OllomoCentre International de Recherches Médicales de Franceville, CIRMF, BP 769 Franceville, Gabon.
François RenaudLaboratoire MIVEGEC, UMR 5290 CNRS-IRD-UMI-UMII, IRD, BP 64501, 34394 Montpellier, France.
Alan W ThomasBiomedical Primate Research Centre, Department of Parasitology, 2280 GH Rijswijk, The Netherlands.
Franck Prugnolle1] Centre International de Recherches Médicales de Franceville, CIRMF, BP 769 Franceville, Gabon [2] Laboratoire MIVEGEC, UMR 5290 CNRS-IRD-UMI-UMII, IRD, BP 64501, 34394 Montpellier, France.
David J ConwayDepartment of Pathogen Molecular Biology, London School of Hygiene &Tropical Medicine, London WC1E 7HT, UK.
Chris Newbold1] Parasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK [2] Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DS, UK [3].
Matthew Berriman1] Parasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK [2].
Wellcome Sanger Institute · GBCentre International de Recherches Médicales de Franceville · GABiomedical Primate Research Centre · NLJohn Radcliffe Hospital · GBLondon School of Hygiene & Tropical Medicine · GBMaladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle · FRNational Institutes of Health · US

Funding

Great Ape Reservoirs of Human MalariaR01AI091595 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2011 to 2019
$5.3M
NIAID NIH HHS R01 AI091595Wellcome TrustWellcome Trust 082130/Z/07/ZWellcome Trust 098051
6 · The paper itself

Abstract

Plasmodium falciparum causes most human malaria deaths, having prehistorically evolved from parasites of African Great Apes. Here we explore the genomic basis of P. falciparum adaptation to human hosts by fully sequencing the genome of the closely related chimpanzee parasite species P. reichenowi, and obtaining partial sequence data from a more distantly related chimpanzee parasite (P. gaboni). The close relationship between P. reichenowi and P. falciparum is emphasized by almost complete conservation of genomic synteny, but against this strikingly conserved background we observe major differences at loci involved in erythrocyte invasion. The organization of most virulence-associated multigene families, including the hypervariable var genes, is broadly conserved, but P. falciparum has a smaller subset of rif and stevor genes whose products are expressed on the infected erythrocyte surface. Genome-wide analysis identifies other loci under recent positive selection, but a limited number of changes at the host-parasite interface may have mediated host switching.

Indexed as

AnimalsBase SequenceGenomeHost SpecificityHumansMolecular Sequence DataMultigene FamilyPan troglodytesPlasmodiumPlasmodium falciparumSequence Analysis, DNA

Identifiers

PMID25203297
PMCPMC4166903
OpenAlexW2149136000

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.