Evidence map›Paper›PMID 25203062›Full record

ArticlePloS one2014

Genitourinary defects associated with genomic deletions in 2p15 encompassing OTX1.

Carolina J Jorgez, Jill A Rosenfeld, Nathan R Wilken, Hima V Vangapandu, Aysegul Sahin, Dung Pham, Claudia M B Carvalho, Anne Bandholz, Amanda Miller, David D Weaver and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Male infertility.Nature reviews. Disease primers · 2023
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  4. Transcription factors in microcephaly.Frontiers in neuroscience · 2023
    Review
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  13. Haploinsufficiency ofMolecular genetics & genomic medicine · 2017
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 2 countries.

Carolina J JorgezCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas, United States of America; Scott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America.
Jill A RosenfeldSignature Genomic Laboratories, PerkinElmer, Inc., Spokane, Washington, United States of America.
Nathan R WilkenScott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America.
Hima V VangapanduScott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America.
Aysegul SahinScott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America.
Dung PhamScott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Anne BandholzSignature Genomic Laboratories, PerkinElmer, Inc., Spokane, Washington, United States of America.
Amanda MillerDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
David D WeaverDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Barbara BurtonAnn & Robert H. Lurie Children's Hospital of Chicago, Chicago, Illinois, United States of America.
Deepti BabuUniversity of Alberta, Edmonton, Alberta, Canada.
John S BamforthUniversity of Alberta, Edmonton, Alberta, Canada.
Timothy WilksMadigan Army Medical Center, Department of Pediatrics, Tacoma, Washington, United States of America.
Daniel P FlynnDepartment of Children's Endocrinology, St. Luke's Children's Specialty Center, Boise, Idaho, United States of America.
Elizabeth RoederDepartment of Pediatrics, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America.
Ankita PatelDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Sau W CheungDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America; Department of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America.
Dolores J LambCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas, United States of America; Scott Department of Urology, Baylor College of Medicine, Houston, Texas, United States of America; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Baylor College of Medicine · USPerkinElmer (United States) · USUniversity of Alberta · CAIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineLurie Children's Hospital · USMadigan Army Medical Center · USSt. Luke's Children's Hospital · USThe University of Texas Health Science Center at San Antonio · US

Funding

Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Multidisciplinary K12 Urologic Research (KURe) Career Development ProgramK12DK083014 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI LAMB, DOLORES JEAN · 2008 to 2017
$6.0M
Improving the Diagnosis of Congenital Genitourinary Defects.R01DK078121 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI LAMB, DOLORES JEAN · 2007 to 2021
$4.8M
NICHD NIH HHS U54 HD083092NIDDK NIH HHS K12 DK0083014NIDDK NIH HHS K12 DK083014NIDDK NIH HHS R01 DK078121NIDDK NIH HHS R01DK078121
6 · The paper itself

Abstract

Normal development of the genitourinary (GU) tract is a complex process that frequently goes awry. In male children the most frequent congenital GU anomalies are cryptorchidism (1-4%), hypospadias (1%) and micropenis (0.35%). Bladder exstrophy and epispadias complex (BEEC) (1∶47000) occurs less frequently but significantly impacts patients' lives. Array comparative genomic hybridization (aCGH) identified seven individuals with overlapping deletions in the 2p15 region (66.0 kb-5.6 Mb). Six of these patients have GU defects, while the remaining patient has no GU defect. These deletions encompass the transcription factor OTX1. Subjects 2-7 had large de novo CNVs (2.39-6.31 Mb) and exhibited features similar to those associated with the 2p15p16.1 and 2p15p14 microdeletion syndromes, including developmental delay, short stature, and variable GU defects. Subject-1 with BEEC had the smallest deletion (66 kb), which deleted only one copy of OTX1. Otx1-null mice have seizures, prepubescent transient growth retardation and gonadal defects. Two subjects have short stature, two have seizures, and six have GU defects, mainly affecting the external genitalia. The presence of GU defects in six patients in our cohort and eight of thirteen patients reported with deletions within 2p14p16.1 (two with deletion of OTX1) suggest that genes in 2p15 are important for GU development. Genitalia defects in these patients could result from the effect of OTX1 on pituitary hormone secretion or on the regulation of SHH signaling, which is crucial for development of the bladder and genitalia.

Indexed as

AdolescentAnimalsChildChild, PreschoolChromosome DeletionChromosomes, Human, Pair 2Developmental DisabilitiesGenitaliaHumansInfantMaleMiceOtx Transcription FactorsSequence DeletionUrinary BladderUrogenital AbnormalitiesOTX1 protein, humanOtx Transcription Factors

Identifiers

PMID25203062
PMCPMC4159299
OpenAlexW2028769030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.