ArticleApplications in plant sciences2014
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
Article in Applications in plant sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.
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81 citing papers in PubMed, 225 citations in OpenAlex.
- Integrative utilization of genomic resources for improved phylogenetic resolution in Sonerileae (Melastomataceae).American journal of botany · 2026Article
- Applying Target Capture Sequencing to Unravel thePlants (Basel, Switzerland) · 2026Article
- Phylogenomic synteny reveals paleohexaploid-derived genomic blocks across Asteraceae.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Urticaceae542 as a novel probe set combining universal and lineage-specific loci for phylogenomics of Urticaceae.Scientific reports · 2025Article
- Are We Witnessing a Speciation Continuum? Evidence From Current and Past Gene Flow in the Genus Oritrophium s.s. (Asteraceae) From the Tropical High Andes.Molecular ecology · 2025Article
- Historical introgression as a driver of diversification of diploid Picris (Compositae) in the Mediterranean Basin.The Plant journal : for cell and molecular biology · 2025Article
- Earth history and trait innovation drive the global radiation of modern toads.Proceedings. Biological sciences · 2025Article
- New insights into the phylogeny and infrageneric taxonomy ofPlant diversity · 2025Article
- A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics.International journal of molecular sciences · 2024Review
- PhytoKeys · 2024Article
- Next-generation fungal identification using target enrichment and Nanopore sequencing.BMC genomics · 2023Article
- African Mountain Thistles: Three New Genera in thePlants (Basel, Switzerland) · 2023Article
- Nano-Strainer: A workflow for the identification of single-copy nuclear loci for plant systematic studies, using target capture kits and Oxford Nanopore long reads.Ecology and evolution · 2023Article
- Repeatedly Northwards and Upwards: Southern African Grasslands Fuel the Colonization of the African Sky Islands inPlants (Basel, Switzerland) · 2023Article
- Edaphic specialization onto bare, rocky outcrops as a factor in the evolution of desert angiosperms.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- A target capture approach for phylogenomic analyses at multiple evolutionary timescales in rosewoods (Dalbergia spp.) and the legume family (Fabaceae).Molecular ecology resources · 2022Article
- The genomic basis of the plant island syndrome in Darwin's giant daisies.Nature communications · 2022Article
- Article
- A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.Systematic biology · 2022Article
- New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq).Frontiers in plant science · 2022Article
21 more citing papers are in PubMed but not listed here.
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Authors and funding
9 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelledPREMISE OF THE STUDY: The Compositae (Asteraceae) are a large and diverse family of plants, and the most comprehensive phylogeny to date is a meta-tree based on 10 chloroplast loci that has several major unresolved nodes. We describe the development of an approach that enables the rapid sequencing of large numbers of orthologous nuclear loci to facilitate efficient phylogenomic analyses. • METHODS AND
resultsWe designed a set of sequence capture probes that target conserved orthologous sequences in the Compositae. We also developed a bioinformatic and phylogenetic workflow for processing and analyzing the resulting data. Application of our approach to 15 species from across the Compositae resulted in the production of phylogenetically informative sequence data from 763 loci and the successful reconstruction of known phylogenetic relationships across the family. •
conclusionsThese methods should be of great use to members of the broader Compositae community, and the general approach should also be of use to researchers studying other families.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.