Evidence map›Paper›PMID 25201971›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Activation of transcription and retrotransposition of a novel retroelement, Steamer, in neoplastic hemocytes of the mollusk Mya arenaria.

Gloria Arriagada, Michael J Metzger, Annette F Muttray, James Sherry, Carol Reinisch, Craig Street, W Ian Lipkin, Stephen P Goff

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 65 citations in OpenAlex.

  1. Atlantic to Pacific: Outbreak of bivalve transmissible neoplasia detected in hybridizing soft-shell clams and eDNA in Puget Sound.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. TheViruses · 2024
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  17. From the raw bar to the bench: Bivalves as models for human health.Developmental and comparative immunology · 2019
    Review
  18. Article
  19. Horizontal transfer of retrotransposons between bivalves and other aquatic species of multiple phyla.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Gloria ArriagadaDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032; Departamento de Ciencias Biologicas, Universidad Andres Bello, Viña del Mar 2520000, Chile;
Michael J MetzgerDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032;
Annette F MuttrayEnvironment Canada, Water Science & Technology Directorate, Burlington, ON, Canada L7R 4A6; and.
James SherryEnvironment Canada, Water Science & Technology Directorate, Burlington, ON, Canada L7R 4A6; and.
Carol ReinischEnvironment Canada, Water Science & Technology Directorate, Burlington, ON, Canada L7R 4A6; and.
Craig StreetCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY 10032.
W Ian LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY 10032.
Stephen P GoffDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032; spg1@columbia.edu.
Columbia University · USEnvironment and Climate Change Canada · CAUniversidad Andrés Bello · CL

Funding

CELL, MOLECULAR AND DEVELOPMENTAL BIOLOGY OF CANCERT32CA009503 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GAUTIER, JEAN · 1985 to 2016
$6.8M
Howard Hughes Medical InstituteNCI NIH HHS T32 CA009503
6 · The paper itself

Abstract

Bivalve mollusks of the North Atlantic, most prominently the soft shell clam Mya arenaria, are afflicted with an epidemic transmissible disease of the circulatory system closely resembling leukemia. The disease is characterized by a dramatic expansion of blast-like cells in the hemolymph with high mitotic index. Examination of hemolymph of diseased clams revealed high levels of reverse transcriptase activity, the hallmark of retroviruses and retroelements. By deep sequencing of RNAs from hemolymph, we identified transcripts of a novel retroelement, here named Steamer. The DNA of the element is marked by long terminal repeats and encodes a single large protein with similarity to mammalian retroviral Gag-Pol proteins. Steamer mRNA levels were specifically elevated in diseased hemocytes, and high expression was correlated with disease status. DNA copy number per genome was present at enormously high levels in diseased hemocytes, indicative of extensive reverse transcription and retrotransposition. Steamer activation in M. arenaria is an example of a catastrophic induction of genetic instability that may initiate or advance the course of leukemia.

Indexed as

Amino Acid SequenceAnimalsBase SequenceDNAGene DosageHematologic NeoplasmsHemocytesHemolymphMolecular Sequence DataMyaPhylogenyRetroelementsRNATranscriptional ActivationDNARetroelementsRNAdisseminated neoplasiahemic neoplasiaintegrationmobile genetic elementretrotransposon

Identifiers

PMID25201971
PMCPMC4191779
OpenAlexW2028459965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.