Evidence map›Paper›PMID 25201946›Full record

ArticleJournal of bacteriology2014

A CRISPR with roles in Myxococcus xanthus development and exopolysaccharide production.

Regina A Wallace, Wesley P Black, Xianshuang Yang, Zhaomin Yang

Abstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Characterization ofmSphere · 2024
    Article
  2. MyxoPortal: a database of myxobacterial genomic features.Database : the journal of biological databases and curation · 2024
    Article
  3. Article
  4. Journal of bacteriology · 2023
    Article
  5. Whole-Genome Sequence ofMicrobiology resource announcements · 2023
    Article
  6. Article
  7. Review
  8. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
  9. Complete Genome Sequence ofMicrobiology resource announcements · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Bacteriophages ofViruses · 2018
    Review
  16. Article
  17. Article
  18. Overview of CRISPR-Cas9 Biology.Cold Spring Harbor protocols · 2016
    Article
  19. CRISPR-Cas: biology, mechanisms and relevance.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Regina A WallaceDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA.
Wesley P BlackDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA.
Xianshuang YangDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA.
Zhaomin YangDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA zmyang@vt.edu.

Funding

VT Post Baccalaureate Research and Education ProgramR25GM066534 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SMITH, EDWARD J · 2003 to 2024
$7.6M
Regulation and Mechanism of M. xanthus Social GlidingR01GM071601 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI YANG, ZHAOMIN · 2004 to 2009
$1.3M
NIGMS NIH HHS GM071601NIGMS NIH HHS R01 GM071601NIGMS NIH HHS R25 GM066534
6 · The paper itself

Abstract

The Gram-negative soil bacterium Myxococcus xanthus utilizes its social (S) gliding motility to move on surfaces during its vegetative and developmental cycles. It is known that S motility requires the type IV pilus (T4P) and the exopolysaccharide (EPS) to function. The T4P is the S motility motor, and it powers cell movement by retraction. As the key regulator of the S motor, EPS is proposed to be the anchor and trigger for T4P retraction. The production of EPS is regulated in turn by the T4P in M. xanthus, and T4P(-) mutants are S(-) and EPS(-). In this study, a ΔpilA strain (T4P(-) and EPS(-)) was mutagenized by a transposon and screened for EPS(+) mutants. A pilA suppressor isolated as such harbored an insertion in the 3rd clustered regularly interspaced short palindromic repeat (CRISPR3) in M. xanthus. Evidence indicates that this transposon insertion, designated CRISPR3*, is a gain-of-function (GOF) mutation. Moreover, CRISPR3* eliminated developmental aggregation in both the wild-type and the pilA mutant backgrounds. Upstream of CRISPR3 are genes encoding the repeat-associated mysterious proteins (RAMPs). These RAMP genes are indispensable for CRISPR3* to affect development and EPS in M. xanthus. Analysis by reverse transcription (RT)-PCR suggested that CRISPR3* led to an increase in the processing of the RNA transcribed from CRISPR3. We propose that certain CRISPR3 transcripts, once expressed and processed, target genes critical for M. xanthus fruiting body development and EPS production in a RAMP-dependent manner.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsDNA Transposable ElementsFimbriae, BacterialGene DeletionGene Expression ProfilingLocomotionMutagenesis, InsertionalMyxococcus xanthusPolysaccharides, BacterialDNA Transposable ElementsPolysaccharides, Bacterial

Identifiers

PMID25201946
PMCPMC4248871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.