Evidence map›Paper›PMID 25200131›Full record

ArticleJournal of viral hepatitis2015

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus.

M W Robinson, R Swann, A Sigruener, S T Barclay, P R Mills, J McLauchlan, A H Patel

Open access · hybridAbstract read
In one paragraph

Article in Journal of viral hepatitis, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Viral genotype correlates with distinct liver gene transcription signatures in chronic hepatitis C virus infection.Liver international : official journal of the International Association for the Study of the Liver · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

M W RobinsonMRC - University of Glasgow Centre for Virus Research, Glasgow, UK.
R Swann
A Sigruener
S T Barclay
P R Mills
J McLauchlan
A H Patel
MRC University of Glasgow Centre for Virus Research · GBNHS Greater Glasgow and Clyde · GBUniversity of Regensburg · DE

Funding

Medical Research Council MC_U130184144Medical Research Council MC_UU_12014/1Medical Research Council MC_UU_12014/2
6 · The paper itself

Abstract

Hepatitis C virus (HCV) can be classified into seven distinct genotypes that are associated with differing pathologies and respond differently to antiviral therapy. In the UK, genotype 1 and 3 are present in approximately equal proportions. Chronic infection with HCV genotype 3 is associated with increased liver steatosis and reduced peripheral total cholesterol levels, which potentially influences peripheral immune responses. To understand these differences, we investigated host gene transcription in peripheral blood mononuclear cells by microarray and quantitative PCR in patients with genotype 1 (n = 22) or genotype 3 infection (n = 22) and matched healthy controls (n = 15). Enrichment of genes involved in immune response and inflammatory pathways were present in patients infected with HCV genotype 1; however, no differences in genes involved in lipid or cholesterol metabolism were detected. This genotype-specific induction of genes is unrelated to IL28B genotype or previous treatment failure. Our data support the hypothesis that genotype 1 infection drives a skewed Type I interferon response and provides a foundation for future investigations into the host-pathogen interactions that underlie the genotype-specific clinical outcomes of chronic HCV infection.

Indexed as

Gene ExpressionGenotypeTranscription, GeneticAdultFemaleGene Expression ProfilingHepacivirusHepatitis C, ChronicHumansLeukocytes, MononuclearLipid MetabolismMaleMetabolic Networks and PathwaysMicroarray AnalysisMiddle AgedReal-Time Polymerase Chain ReactiongenotypeHCVIFNinterferon-stimulated genestranscriptomics

Identifiers

PMID25200131
PMCPMC4409080
OpenAlexW2055949285

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.