Evidence map›Paper›PMID 25199956›Full record

ArticleBiological psychiatry2016

Transcriptome Analysis of the Human Striatum in Tourette Syndrome.

Jessica B Lennington, Gianfilippo Coppola, Yuko Kataoka-Sasaki, Thomas V Fernandez, Dean Palejev, Yifan Li, Anita Huttner, Mihovil Pletikos, Nenad Sestan, James F Leckman and 1 more

Abstract read
In one paragraph

Article in Biological psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
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  3. Pooled it
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  13. Clonidine Ameliorates Neuroinflammation in the Rat Model of Tourette Syndrome.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. The volatile oil ofFrontiers in pharmacology · 2025
    Article
  18. Article
  19. Article
  20. Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jessica B LenningtonChild Study Center, Yale University School of Medicine, New Haven, Connecticut; Program in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut.
Gianfilippo CoppolaChild Study Center, Yale University School of Medicine, New Haven, Connecticut; Program in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut.
Yuko Kataoka-SasakiChild Study Center, Yale University School of Medicine, New Haven, Connecticut; Program in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut.
Thomas V FernandezChild Study Center, Yale University School of Medicine, New Haven, Connecticut; Department of Psychiatry, Yale University School of Medicine, New Haven, Connecticut.
Dean PalejevChild Study Center, Yale University School of Medicine, New Haven, Connecticut; Program in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut.
Yifan LiChild Study Center, Yale University School of Medicine, New Haven, Connecticut.
Anita HuttnerProgram in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut; Department of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Mihovil PletikosDepartment of Neurobiology, Yale University School of Medicine, New Haven, Connecticut.
Nenad SestanYale Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, Connecticut; Department of Neurobiology, Yale University School of Medicine, New Haven, Connecticut.
James F LeckmanChild Study Center, Yale University School of Medicine, New Haven, Connecticut.
Flora M VaccarinoProgram in Neurodevelopment and Regeneration, Yale University School of Medicine, New Haven, Connecticut; Yale Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, Connecticut; Department of Neurobiology, Yale University School of Medicine, New Haven, Connecticut. Electronic address: flora.vaccarino@yale.edu.

Funding

Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
A Natonal Resource for Postmortem Brain ResearchR24MH068855 · NIMH · MC LEAN HOSPITAL (BELMONT, MA) · PI BENES, FRANCINE M. · 2003 to 2012
$14.8M
TRAINING PROGRAM IN CHILDHOOD NEUROPSYCHIATRIC DISORDERST32MH018268 · NIMH · YALE UNIVERSITY · PI Michael H Bloch, MICHAEL J CROWLEY · 1985 to 2026
$11.0M
Development and Organization of the Human Frontal CortexU01MH081896 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2009 to 2013
$5.7M
Research Training for Medical Students & Physician-Scientists in Child PsychiatryR25MH077823 · NIMH · YALE UNIVERSITY · PI ANDRES S MARTIN · 2006 to 2026
$4.0M
Inhibitory Interneurons in Tourette SyndromeR01NS054994 · NINDS · YALE UNIVERSITY · PI VACCARINO, FLORA M · 2007 to 2010
$1.1M
Genomic Investigations of Tourette's DisorderK08MH099424 · NIMH · YALE UNIVERSITY · PI FERNANDEZ, THOMAS V · 2012 to 2015
$718k
NCATS NIH HHS UL1 TR000142NIMH NIH HHS K08 MH099424NIMH NIH HHS MH081896NIMH NIH HHS R24 MH068855NIMH NIH HHS R25 MH077823NIMH NIH HHS T32 MH018268NIMH NIH HHS U01 MH081896NINDS NIH HHS NS054994NINDS NIH HHS R01 NS054994
6 · The paper itself

Abstract

backgroundGenome-wide association studies have not revealed any risk-conferring common genetic variants in Tourette syndrome (TS), requiring the adoption of alternative approaches to investigate the pathophysiology of this disorder.

methodsWe obtained the basal ganglia transcriptome by RNA sequencing in the caudate and putamen of nine TS and nine matched normal control subjects.

resultsWe found 309 downregulated and 822 upregulated genes in the caudate and putamen (striatum) of TS individuals. Using data-driven gene network analysis, we identified 17 gene coexpression modules associated with TS. The top-scoring downregulated module in TS was enriched in striatal interneuron transcripts, which was confirmed by decreased numbers of cholinergic and gamma-aminobutyric acidergic interneurons by immunohistochemistry in the same regions. The top-scoring upregulated module was enriched in immune-related genes, consistent with activation of microglia in patients' striatum. Genes implicated by copy number variants in TS were enriched in the interneuron module, as well as in a protocadherin module. Module clustering revealed that the interneuron module was correlated with a neuronal metabolism module.

conclusionsConvergence of differential expression, network analyses, and module clustering, together with copy number variants implicated in TS, strongly implicates disrupted interneuron signaling in the pathophysiology of severe TS and suggests that metabolic alterations may be linked to their death or dysfunction.

Indexed as

TranscriptomeAcetylcholineAdultAgedAged, 80 and overDNA Copy Number VariationsFemalegamma-Aminobutyric AcidGene Expression ProfilingGene Regulatory NetworksGenome-Wide Association StudyHumansInterneuronsMaleMiddle AgedPutamenAcetylcholinegamma-Aminobutyric AcidBasal gangliaImmune systemInterneuronNetworkNitric oxide synthaseNOSRNA-Seq

Identifiers

PMID25199956
PMCPMC4305353

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.