Evidence map›Paper›PMID 25199834›Full record

ArticleCell reports2014

Basal activity of a PARP1-NuA4 complex varies dramatically across cancer cell lines.

Kristin A Krukenberg, Ruomu Jiang, Judith A Steen, Timothy J Mitchison

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  3. LncRNAInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kristin A KrukenbergDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: kristin_krukenberg@hms.harvard.edu.
Ruomu JiangDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.
Judith A SteenF.M. Kirby Neurobiology Center, Boston Children's Hospital and Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.
Timothy J MitchisonDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.
Harvard University · USBoston Children's Hospital · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
Quantitative Analysis of Cell Death Pathways in CancerP01CA139980 · NCI · HARVARD MEDICAL SCHOOL · PI MITCHISON, TIMOTHY J · 2010 to 2014
$9.0M
The differential regulation of poly(ADP-ribose) in cancer and its role in proteinK99CA175176 · NCI · HARVARD MEDICAL SCHOOL · PI KRUKENBERG, KRISTIN ANNE · 2013 to 2014
$179k
NCI NIH HHS 1 K99 CA175176-01NCI NIH HHS 5 P01 CA139980-04NCI NIH HHS K99 CA175176NCI NIH HHS P01 CA139980NICHD NIH HHS NIH-P30-HD 18655NICHD NIH HHS P30 HD018655
6 · The paper itself

Abstract

Poly(ADP-ribose) polymerases (PARPs) catalyze poly(ADP-ribose) addition onto proteins, an important posttranslational modification involved in transcription, DNA damage repair, and stem cell identity. Previous studies established the activation of PARP1 in response to DNA damage, but little is known about PARP1 regulation outside of DNA repair. We developed an assay for measuring PARP activity in cell lysates and found that the basal activity of PARP1 was highly variable across breast cancer cell lines, independent of DNA damage. Sucrose gradient fractionation demonstrated that PARP1 existed in at least three biochemically distinct states in both high- and low-activity lines. A discovered complex containing the NuA4 chromatin-remodeling complex and PARP1 was responsible for high basal PARP1 activity, and NuA4 subunits were required for this activity. These findings present a pathway for PARP1 activation and a direct link between PARP1 and chromatin remodeling outside of the DNA damage response.

Indexed as

Breast NeoplasmsCell Line, TumorFemaleHistone AcetyltransferasesHumansMCF-7 CellsPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesProtein BindingProtein SubunitsRNA InterferenceRNA, Small InterferingHistone AcetyltransferasesPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesProtein SubunitsRNA, Small Interfering

Identifiers

PMID25199834
PMCPMC4177365
OpenAlexW2065731169

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.