Evidence map›Paper›PMID 25197941›Full record

ArticleNature communications2014

Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemia.

Vinod Kumar, Shih-Chin Cheng, Melissa D Johnson, Sanne P Smeekens, Agnieszka Wojtowicz, Evangelos Giamarellos-Bourboulis, Juha Karjalainen, Lude Franke, Sebo Withoff, Theo S Plantinga and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 3 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 3 syntheses or guidelines pooled it, 80 citations in OpenAlex.

  1. Host genetic susceptibility to mycetoma.PLoS neglected tropical diseases · 2020
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Candidiasis and Other Emerging Yeasts.Current fungal infection reports · 2023
    Review
  11. Review
  12. Diagnosis and Treatment of Invasive Candidiasis.Antibiotics (Basel, Switzerland) · 2022
    Review
  13. Review
  14. Review
  15. Article
  16. CD58 Immunobiology at a Glance.Frontiers in immunology · 2021
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 11 institutions in 5 countries.

Vinod Kumar *University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.
Shih-Chin Cheng *Department of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Melissa D Johnson *Duke University Medical Center, Durham, North Carolina, USA.
Sanne P SmeekensDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Agnieszka WojtowiczService des Maladies Infectieuses, Centre Hospitalier Universitaire Vaudoises, Lausanne, Switzerland.
Evangelos Giamarellos-Bourboulis4 Department of Internal Medicine, University of Athens, Medical School, Athens, Greece, and Center for Sepsis Control and Care, Jena University Hospital, Jena, Germany.
Juha KarjalainenUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.
Lude FrankeUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.
Sebo WithoffUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.
Theo S PlantingaDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Frank L van de VeerdonkDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Jos W M van der MeerDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Leo A B JoostenDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Pierre-Yves BochudService des Maladies Infectieuses, Centre Hospitalier Universitaire Vaudoises, Lausanne, Switzerland.
Oscar MarchettiService des Maladies Infectieuses, Centre Hospitalier Universitaire Vaudoises, Lausanne, Switzerland.
John R PerfectDuke University Medical Center, Durham, North Carolina, USA.
Ramnik XavierThe Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Bart Jan KullbergDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Cisca WijmengaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.
Mihai G NeteaDepartment of Internal Medicine and Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Radboud University Medical Center · NLRadboud University Nijmegen · NLUniversity Hospital of Lausanne · CHUniversity of Groningen · NLMax Planck Institute for Molecular Genetics · DEUniversity Medical Center Groningen · NLBroad Institute · USCampbell University · USDuke University Hospital · USHarvard University · USNational and Kapodistrian University of Athens · GR

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Ramnik J Xavier · 1991 to 2026
$35.3M
Host-Response Relationships in Patients with CandidemiaK23AI051537 · NIAID · DUKE UNIVERSITY · PI JOHNSON, MELISSA D · 2002 to 2006
$721k
European Research Council 310372NIAID NIH HHS K23 AI051537NIAID NIH HHS K23AI51537NIDDK NIH HHS P30 DK043351
6 · The paper itself

Abstract

Candidaemia is the fourth most common cause of bloodstream infection, with a high mortality rate of up to 40%. Identification of host genetic factors that confer susceptibility to candidaemia may aid in designing adjunctive immunotherapeutic strategies. Here we hypothesize that variation in immune genes may predispose to candidaemia. We analyse 118,989 single-nucleotide polymorphisms (SNPs) across 186 loci known to be associated with immune-mediated diseases in the largest candidaemia cohort to date of 217 patients of European ancestry and a group of 11,920 controls. We validate the significant associations by comparison with a disease-matched control group. We observe significant association between candidaemia and SNPs in the CD58 (P = 1.97 × 10(-11); odds ratio (OR) = 4.68), LCE4A-C1orf68 (P = 1.98 × 10(-10); OR = 4.25) and TAGAP (P = 1.84 × 10(-8); OR = 2.96) loci. Individuals carrying two or more risk alleles have an increased risk for candidaemia of 19.4-fold compared with individuals carrying no risk allele. We identify three novel genetic risk factors for candidaemia, which we subsequently validate for their role in antifungal host defence.

Indexed as

AdultAgedCandidemiaCase-Control StudiesCD58 AntigensCornified Envelope Proline-Rich ProteinsFemaleGenetic Predisposition to DiseaseGTPase-Activating ProteinsHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideWhite PeopleCD58 AntigensCornified Envelope Proline-Rich ProteinsGTPase-Activating ProteinsLCE4A protein, humanTAGAP protein, human

Identifiers

PMID25197941
PMCPMC5142444
OpenAlexW2094985331

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.