ArticlePloS one2014
Comparative transcriptomic characterization of the early development in Pacific white shrimp Litopenaeus vannamei.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Who cites it
43 citing papers in PubMed.
- Relating differential gene expression and genomic analyses to functional adaptation at various developmental stages of the blue crab, Callinectes sapidus.BMC genomics · 2025Article
- TDO-mediated tissue-specific regulation of kynurenine pathway in the brain and gill of Litopenaeus vannamei.BMC genomics · 2025Article
- Dynamic epigenomic landscape and gene regulatory networks during embryonic development in Pacific white shrimp (Litopenaeus vannamei) as revealed by histone modification profiling using CUT&Tag.Epigenetics & chromatin · 2025Article
- Key Neuropeptides Regulating Molting in Pacific White Shrimp (Animals : an open access journal from MDPI · 2025Article
- Dynamic Alternative Polyadenylation duringGenes · 2024Article
- Comparative transcriptomic analysis primarily explores the molecular mechanism of compound eye formation in Neocaridina denticulata sinensis.BMC genomics · 2024Article
- Comparative Transcriptome Analysis of the Response toBiology · 2023Article
- Gene Structure, Expression and Function Analysis ofInternational journal of molecular sciences · 2023Article
- Effects of Sulfamethoxazole and Florfenicol on Growth, Antioxidant Capacity, Immune Responses and Intestinal Microbiota in Pacific White ShrimpAntibiotics (Basel, Switzerland) · 2023Article
- Crustin Defense againstMarine drugs · 2023Article
- Structure and function analyses of the Mmd2 gene in pacific white shrimpFrontiers in genetics · 2023Article
- The Hedgehog pathway in penaeid shrimp: developmental expression and evolution of splice junctions in Pancrustacea.Genetica · 2022Article
- Genome-Wide Analysis Indicates a Complete Prostaglandin Pathway from Synthesis to Inactivation in Pacific White Shrimp,International journal of molecular sciences · 2022Article
- Review
- Transcriptomic analysis of the black tiger shrimp (Penaeus monodon) reveals insights into immune development in their early life stages.Scientific reports · 2021Article
- The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation.Nature communications · 2021Article
- Characterization and Expression Analysis of Insulin Growth Factor Binding Proteins (IGFBPs) in Pacific White ShrimpInternational journal of molecular sciences · 2021Article
- Signaling Pathways That Regulate the Crustacean Molting Gland.Frontiers in endocrinology · 2021Review
- Molecular Identification of Anion Exchange Protein 3 in Pacific White Shrimp (Frontiers in physiology · 2021Article
- Genomic Characterization and Expression of Juvenile Hormone Esterase-Like Carboxylesterase Genes in Pacific White Shrimp,International journal of molecular sciences · 2020Article
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Authors and funding
6 authors.
Funding
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Abstract
Penaeid shrimp has a distinctive metamorphosis stage during early development. Although morphological and biochemical studies about this ontogeny have been developed for decades, researches on gene expression level are still scarce. In this study, we have investigated the transcriptomes of five continuous developmental stages in Pacific white shrimp (Litopenaeus vannamei) with high throughput Illumina sequencing technology. The reads were assembled and clustered into 66,815 unigenes, of which 32,398 have putative homologues in nr database, 14,981 have been classified into diverse functional categories by Gene Ontology (GO) annotation and 26,257 have been associated with 255 pathways by KEGG pathway mapping. Meanwhile, the differentially expressed genes (DEGs) between adjacent developmental stages were identified and gene expression patterns were clustered. By GO term enrichment analysis, KEGG pathway enrichment analysis and functional gene profiling, the physiological changes during shrimp metamorphosis could be better understood, especially histogenesis, diet transition, muscle development and exoskeleton reconstruction. In conclusion, this is the first study that characterized the integrated transcriptomic profiles during early development of penaeid shrimp, and these findings will serve as significant references for shrimp developmental biology and aquaculture research.
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