Evidence map›Paper›PMID 25197456›Full record

ArticleStandards in genomic sciences2014

Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033.

Adnan Niazi, Shahid Manzoor, Sarosh Bejai, Johan Meijer, Erik Bongcam-Rudloff

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. The Whole-Genome Sequence ofGenome announcements · 2017
    Article
  4. Article
  5. Draft genome sequence ofStandards in genomic sciences · 2017
    Article
  6. Article
  7. Comparative Genomic Analysis ofFrontiers in microbiology · 2016
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Adnan NiaziDepartment of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Swedish University of Agricultural Sciences, Uppsala, Sweden .
Shahid ManzoorDepartment of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Swedish University of Agricultural Sciences, Uppsala, Sweden . ; University of the Punjab, Lahore, Pakistan .
Sarosh BejaiDepartment of Plant Biology and Forest Genetics, Uppsala Biocenter, Swedish University of Agricultural Sciences and Linnéan Center for Plant Biology, Uppsala, Sweden.
Johan MeijerDepartment of Plant Biology and Forest Genetics, Uppsala Biocenter, Swedish University of Agricultural Sciences and Linnéan Center for Plant Biology, Uppsala, Sweden.
Erik Bongcam-RudloffDepartment of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Swedish University of Agricultural Sciences, Uppsala, Sweden .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus amyloliquefaciens subsp. plantarum UCMB5033 is of special interest for its ability to promote host plant growth through production of stimulating compounds and suppression of soil borne pathogens by synthesizing antibacterial and antifungal metabolites or priming plant defense as induced systemic resistance. The genome of B. amyloliquefaciens UCMB5033 comprises a 4,071,167 bp long circular chromosome that consists of 3,912 protein-coding genes, 86 tRNA genes and 10 rRNA operons.

Indexed as

Bacillus amyloliquefaciensbiocontrolprimingrhizobacteriastress

Identifiers

PMID25197456
PMCPMC4148973

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.