Evidence map›Paper›PMID 25197454›Full record

ArticleStandards in genomic sciences2014

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

Sven Breider, Hazuki Teshima, Jörn Petersen, Olga Chertkov, Hajnalka Dalingault, Amy Chen, Amrita Pati, Natalia Ivanova, Alla Lapidus, Lynne A Goodwin and 10 more

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Article in Standards in genomic sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Complete Genome Sequence ofMicrobiology resource announcements · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Sven BreiderInstitute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
Hazuki TeshimaLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Jörn PetersenLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Olga ChertkovLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Hajnalka DalingaultLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Amy ChenBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Alla LapidusDOE Joint Genome Institute, Walnut Creek, California, USA.
Lynne A GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
Patrick ChainLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
John C DetterLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
Manfred RohdeHZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
Brian J TindallLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Nikos C KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Meinhard SimonInstitute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
Markus GökerLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Hans-Peter KlenkLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Thorsten BrinkhoffInstitute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.

Indexed as

facultative anaerobeMarinemethylated compoundsmotileRhodobacteraceaeRoseobacter clade

Identifiers

PMID25197454
PMCPMC4148953

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