Evidence map›Paper›PMID 25197447›Full record

ArticleStandards in genomic sciences2014

Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

Wayne Reeve, Ross Ballard, Elizabeth Drew, Rui Tian, Lambert Bräu, Lynne Goodwin, Marcel Huntemann, James Han, Reddy Tatiparthi, Amy Chen and 7 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Ross BallardSouth Australian Research and Development Institute, Urrbrae, South Australia, Australia.
Elizabeth DrewSouth Australian Research and Development Institute, Urrbrae, South Australia, Australia.
Rui TianCentre for Rhizobium Studies, Murdoch University, Western Australia, Australia.
Lambert BräuSchool of Life and Environmental Sciences, Deakin University, Victoria, Australia.
Lynne GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Reddy TatiparthiDOE Joint Genome Institute, Walnut Creek, California, USA.
Amy ChenBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Konstantinos MavrommatisBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Krishna PalaniappanBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Joint Genome Institute · USLawrence Berkeley National Laboratory · USDeakin University · AUMurdoch University · AUSouth Australian Research and Development Institute · AULos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ensifer meliloti strain RRI128 is an aerobic, motile, Gram-negative, non-spore-forming rod. RRI128 was isolated from a nodule recovered from the roots of barrel medic (Medicago truncatula) grown in the greenhouse and inoculated with soil collected from Victoria, Australia. The strain is used in commercial inoculants in Australia. RRI128 nodulates and forms an effective symbiosis with a diverse range of lucerne cultivars (Medicago sativa) and several species of annual medic (M. truncatula, Medicago littoralis and Medicago tornata), but forms an ineffective symbiosis with Medicago polymorpha. Here we describe the features of E. meliloti strain RRI128, together with genome sequence information and annotation. The 6,900,273 bp draft genome is arranged into 156 scaffolds of 157 contigs, contains 6,683 protein-coding genes and 87 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Indexed as

Alphaproteobacterianitrogen fixationrhizobiaroot-nodule bacteria

Identifiers

PMID25197447
PMCPMC4149011
OpenAlexW2148335446

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.