Evidence map›Paper›PMID 25197442›Full record

ArticleStandards in genomic sciences2014

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia.

Robert Walker, Elizabeth Watkin, Rui Tian, Lambert Bräu, Graham O'Hara, Lynne Goodwin, James Han, Tatiparthi Reddy, Marcel Huntemann, Amrita Pati and 6 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Draft genome ofStandards in genomic sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Robert WalkerSchool of Biomedical Sciences, Faculty of Health Sciences, Curtin University, Western Australia, Australia.
Elizabeth WatkinSchool of Biomedical Sciences, Faculty of Health Sciences, Curtin University, Western Australia, Australia.
Rui TianCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Western Australia, Australia.
Lambert BräuSchool of Life and Environmental Sciences, Deakin University, Victoria, Australia.
Graham O'HaraCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Western Australia, Australia.
Lynne GoodwinLos Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Tatiparthi ReddyDOE Joint Genome Institute, Walnut Creek, California, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Konstantinos MavromatisDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Wayne ReeveCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Western Australia, Australia.
Joint Genome Institute · USMurdoch University · AUCurtin University · AUDeakin University · AULawrence Berkeley National Laboratory · USLos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Burkholderia sp. strain WSM2232 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod that was trapped in 2001 from acidic soil collected from Karijini National Park (Australia) using Gastrolobium capitatum as a host. WSM2232 was effective in nitrogen fixation with G. capitatum but subsequently lost symbiotic competence during long-term storage. Here we describe the features of Burkholderia sp. strain WSM2232, together with genome sequence information and its annotation. The 7,208,311 bp standard-draft genome is arranged into 72 scaffolds of 72 contigs containing 6,322 protein-coding genes and 61 RNA-only encoding genes. The loss of symbiotic capability can now be attributed to the loss of nodulation and nitrogen fixation genes from the genome. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Indexed as

Betaproteobacterianitrogen fixationrhizobiaroot-nodule bacteria

Identifiers

PMID25197442
PMCPMC4148988
OpenAlexW2916073534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.