Evidence map›Paper›PMID 25197162›Full record

ArticleMolecular simulation2014

Recent Developments in Molecular Simulation Approaches to Study Spherical Virus Capsids.

Eric R May

Abstract read
In one paragraph

Article in Molecular simulation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. IRAM: virus capsid database and analysis resource.Database : the journal of biological databases and curation · 2019
    Article
  3. All-atom virus simulations.Current opinion in virology · 2018
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Eric R MayDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA 06269.

Funding

Computational Studies of Early Stage Cell Entry Events by Non-enveloped VirusesK22AI099163 · NIAID · UNIVERSITY OF CONNECTICUT STORRS · PI MAY, ERIC ROBERT · 2013 to 2014
$260k
NIAID NIH HHS K22 AI099163
6 · The paper itself

Abstract

Viruses are a particularly challenging systems to study via molecular simulation methods. Virus capsids typically consist of over 100 subunit proteins and reach dimensions of over 100 nm; solvated viruses capsid systems can be over 1 million atoms in size. In this review, I will present recent developments which have attempted to overcome the significant computational expense to perform simulations which can inform experimental studies, make useful predictions about biological phenomena and calculate material properties relevant to nanotechnology design efforts.

Indexed as

Coarse-Grained ModelsGō-ModelsMolecular DynamicsNormal Mode Analysis

Identifiers

PMID25197162
PMCPMC4153711

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.