ArticleProceedings of the National Academy of Sciences of the United States of America2014
Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- Identification of adaptive selection footprints and adaptation strategies of hulless barley (Hordeum vulgare var. coeleste) on the Qinghai-Tibet Plateau.BMC genomics · 2026Article
- Genome-wide association study of pre-indicative agronomic traits affecting malt quality in Ethiopian barley (Hordeum vulgare L.) germplasm.BMC genomics · 2026Article
- Most Tibetan weedy barleys originated via recombination between Btr1 and Btr2 in domesticated barley.Plant communications · 2024Article
- Transcriptome and metabolome analyses reveal molecular insights into waterlogging tolerance in Barley.BMC plant biology · 2024Article
- Genome resequencing and transcriptome profiling reveal molecular evidence of tolerance to water deficit in barley.Journal of advanced research · 2023Article
- A New Fluorescence Detection Method for Tryptophan- and Tyrosine-Derived Allelopathic Compounds in Barley and Lupin.Plants (Basel, Switzerland) · 2023Article
- Genome diversity and highland-adaptative variation in Tibet barley landrace population of China.Frontiers in plant science · 2023Article
- Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley.Plant biotechnology journal · 2023Article
- Article
- New Insights into the Genomic Structure ofPlants (Basel, Switzerland) · 2022Article
- Transcriptome and Metabolite Insights into Domestication Process of Cultivated Barley in China.Plants (Basel, Switzerland) · 2022Article
- Mechanistic Insights into Potassium-Conferred Drought Stress Tolerance in Cultivated and Tibetan Wild Barley: Differential Osmoregulation, Nutrient Retention, Secondary Metabolism and Antioxidative Defense Capacity.International journal of molecular sciences · 2021Article
- Multi-Omics Analysis Reveals the Mechanism Underlying the Edaphic Adaptation in Wild Barley at Evolution Slope (Tabigha).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021Article
- Article
- Genome-wide genotyping elucidates the geographical diversification and dispersal of the polyploid and clonally propagated yam (Dioscorea alata).Annals of botany · 2020Article
- Genome-Wide Identification and Characterization of Drought Stress Responsive microRNAs in Tibetan Wild Barley.International journal of molecular sciences · 2020Article
- Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets.Genes · 2020Article
- Characterization of Genetic Diversity and Genome-Wide Association Mapping of Three Agronomic Traits in Qingke Barley (Frontiers in genetics · 2020Article
- Back to the Wild: On a Quest for Donors Toward Salinity Tolerant Rice.Frontiers in plant science · 2020Review
- A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication.BMC genomics · 2019Article
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11 authors.
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Abstract
The domestication of cultivated barley has been used as a model system for studying the origins and early spread of agrarian culture. Our previous results indicated that the Tibetan Plateau and its vicinity is one of the centers of domestication of cultivated barley. Here we reveal multiple origins of domesticated barley using transcriptome profiling of cultivated and wild-barley genotypes. Approximately 48-Gb of clean transcript sequences in 12 Hordeum spontaneum and 9 Hordeum vulgare accessions were generated. We reported 12,530 de novo assembled transcripts in all of the 21 samples. Population structure analysis showed that Tibetan hulless barley (qingke) might have existed in the early stage of domestication. Based on the large number of unique genomic regions showing the similarity between cultivated and wild-barley groups, we propose that the genomic origin of modern cultivated barley is derived from wild-barley genotypes in the Fertile Crescent (mainly in chromosomes 1H, 2H, and 3H) and Tibet (mainly in chromosomes 4H, 5H, 6H, and 7H). This study indicates that the domestication of barley may have occurred over time in geographically distinct regions.
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