Evidence map›Paper›PMID 25197089›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila.

Debasis Panda, Pau Pascual-Garcia, Margaret Dunagin, Matthew Tudor, Kaycie C Hopkins, Jie Xu, Beth Gold, Arjun Raj, Maya Capelson, Sara Cherry

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

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  12. Multifunctionality of F-rich nucleoporins.Biochemical Society transactions · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Debasis PandaDepartment of Microbiology.
Pau Pascual-GarciaDepartment of Cell and Developmental Biology.
Margaret DunaginDepartment of Bioengineering, and.
Matthew TudorDepartment of Cell and Developmental Biology.
Kaycie C HopkinsDepartment of Microbiology.
Jie XuDepartment of Microbiology.
Beth GoldDepartment of Microbiology.
Arjun RajDepartment of Bioengineering, and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104.
Maya CapelsonDepartment of Cell and Developmental Biology.
Sara CherryDepartment of Microbiology, Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104 cherrys@mail.med.upenn.edu.
Czech Academy of Sciences, Institute of Microbiology · CZBioengineering Center · RU

Funding

Vaccine strategy for broad spectrum protection agains non-typhoidal salmonellU54AI057168 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI LEVINE, MYRON MAX · 2003 to 2013
$91.5M
The role of autophagy in innate anti-viral immunity in DrosophilaR01AI074951 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA · 2007 to 2017
$4.2M
A Comprehensive Spatial Picture of Transcription in the NucleusDP2OD008514 · OD · UNIVERSITY OF PENNSYLVANIA · PI RAJ, ARJUN · 2011 to 2011
$2.4M
Dissecting the alphavirus entry receptor NRAMPR01AI095500 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA · 2012 to 2015
$1.9M
Defining the determinants on the alphavirus receptor NRAMP required for virus binR21AI103441 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA · 2013 to 2014
$440k
NIAID NIH HHS R01 AI074951NIAID NIH HHS R01AI074951NIAID NIH HHS R01 AI095500NIAID NIH HHS R01AI095500NIAID NIH HHS R21 AI103441NIAID NIH HHS R21AI103441NIAID NIH HHS U54 AI057168NIAID NIH HHS U54AI057168NIH HHS DP2 OD008514
6 · The paper itself

Abstract

In response to infection, the innate immune system rapidly activates an elaborate and tightly orchestrated gene expression program to induce critical antimicrobial genes. While many key players in this program have been identified in disparate biological systems, it is clear that there are additional uncharacterized mechanisms at play. Our previous studies revealed that a rapidly-induced antiviral gene expression program is active against disparate human arthropod-borne viruses in Drosophila. Moreover, one-half of this program is regulated at the level of transcriptional pausing. Here we found that Nup98, a virus-induced gene, was antiviral against a panel of viruses both in cells and adult flies since its depletion significantly enhanced viral infection. Mechanistically, we found that Nup98 promotes antiviral gene expression in Drosophila at the level of transcription. Expression profiling revealed that the virus-induced activation of 36 genes was abrogated upon loss of Nup98; and we found that a subset of these Nup98-dependent genes were antiviral. These Nup98-dependent virus-induced genes are Cdk9-dependent and translation-independent suggesting that these are rapidly induced primary response genes. Biochemically, we demonstrate that Nup98 is directly bound to the promoters of virus-induced genes, and that it promotes occupancy of the initiating form of RNA polymerase II at these promoters, which are rapidly induced on viral infection to restrict human arboviruses in insects.

Indexed as

Gene Expression RegulationAgingAnimalsCell NucleusDrosophila melanogasterDrosophila ProteinsGenes, InsectHumansNuclear PoreNuclear Pore Complex ProteinsPromoter Regions, GeneticProtein BindingProtein TransportRNA, MessengerRNA Polymerase IIRNA VirusesDrosophila ProteinsNuclear Pore Complex Proteinsnucleoporin 98, DrosophilaRNA, MessengerRNA Polymerase IIinnate immunitynuclear porenucleoporinpol II regulationP-TEFb

Identifiers

PMID25197089
PMCPMC4169978
OpenAlexW2072483352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.