Evidence map›Paper›PMID 25197059›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Mu transpososome and RecBCD nuclease collaborate in the repair of simple Mu insertions.

Wonyoung Choi, Sooin Jang, Rasika M Harshey

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Phage Mu Gam protein promotes NHEJ in concert withProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  6. Article
  7. Article
  8. DNA Transposition at Work.Chemical reviews · 2016
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Wonyoung ChoiDepartment of Molecular Biosciences and Institute of Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712.
Sooin JangDepartment of Molecular Biosciences and Institute of Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712.
Rasika M HarsheyDepartment of Molecular Biosciences and Institute of Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712 rasika@austin.utexas.edu.
The University of Texas at Austin · US

Funding

STUDIES ON BACTERIOPHAGE MU DNA TRANSPOSITIONR01GM033247 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI HARSHEY, RASIKA M · 1985 to 2013
$4.3M
NIGMS NIH HHS GM33247NIGMS NIH HHS R01 GM033247
6 · The paper itself

Abstract

The genome of transposable phage Mu is packaged as a linear segment, flanked by several hundred base pairs of non-Mu DNA. The linear ends are held together and protected from nucleases by the phage N protein. After transposition into the Escherichia coli chromosome, the flanking DNA (FD) is degraded, and the 5-bp gaps left in the target are repaired to generate a simple Mu insertion. Our study provides insights into this repair pathway. The data suggest that the first event in repair is removal of the FD by the RecBCD exonuclease, whose entry past the N-protein block is licensed by the transpososome. In vitro experiments reveal that, when RecBCD is allowed entry into the FD, it degrades this DNA until it arrives at the transpososome, which presents a barrier for further RecBCD movement. RecBCD action is required for stimulating endonucleolytic cleavage within the transpososome-protected DNA, leaving 4-nt flanks outside both Mu ends. This end product of collaboration between the transpososome and RecBCD resembles the intermediate products of Tn7 and retroviral and retrotransposon transposition, and may hint at a common gap-repair mechanism in these diverse transposons.

Indexed as

Amino Acid SubstitutionBacteriophage muDNA RepairDNA Transposable ElementsDNA, ViralEscherichia coli K12Exodeoxyribonuclease VHEK293 CellsHumansModels, BiologicalMutagenesis, Site-DirectedSaccharomyces cerevisiaeSpecies SpecificityTransposasesViral ProteinsDNA Transposable ElementsDNA, ViralExodeoxyribonuclease Vmu transposaseTransposasesViral Proteinsconservative integrationnonreplicative transposition

Identifiers

PMID25197059
PMCPMC4191772
OpenAlexW2046584207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.