Evidence map›Paper›PMID 25197043›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Cell cycle-dependent adaptor complex for ClpXP-mediated proteolysis directly integrates phosphorylation and second messenger signals.

Stephen C Smith, Kamal K Joshi, Justin J Zik, Katherine Trinh, Aron Kamajaya, Peter Chien, Kathleen R Ryan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
  2. Article
  3. TheAnnual review of microbiology · 2023
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Cargo competition for a dimerization interface restricts and stabilizes a bacterial protease adaptor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. A localized adaptor protein performs distinct functions at theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. The type IV pilin PilA couples surface attachment and cell-cycle initiation inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Review
  17. Article
  18. Multilayered control of chromosome replication inBiochemical Society transactions · 2019
    Review
  19. Article
  20. Regulated Proteolysis in Bacteria.Annual review of biochemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Stephen C SmithDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; and.
Kamal K JoshiProgram in Molecular and Cellular Biology, Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003.
Justin J ZikDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; and.
Katherine TrinhDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; and.
Aron KamajayaDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; and.
Peter ChienProgram in Molecular and Cellular Biology, Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003 krr@berkeley.edu pchien@biochem.umass.edu.
Kathleen R RyanDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; and krr@berkeley.edu pchien@biochem.umass.edu.

Funding

Stress related proteases in Caulobacter crescentusR01GM111706 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHIEN, PETER · 2014 to 2018
$1.6M
Specificity, Regulation and Proteomic Profiling of an Essential AAA+ ProteaseR00GM084157 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHIEN, PETER · 2010 to 2012
$742k
NIGMS NIH HHS R00 GM084157NIGMS NIH HHS R00GM084157NIGMS NIH HHS R01 GM111706
6 · The paper itself

Abstract

The cell-division cycle of Caulobacter crescentus depends on periodic activation and deactivation of the essential response regulator CtrA. Although CtrA is critical for transcription during some parts of the cell cycle, its activity must be eliminated before chromosome replication because CtrA also blocks the initiation of DNA replication. CtrA activity is down-regulated both by dephosphorylation and by proteolysis, mediated by the ubiquitous ATP-dependent protease ClpXP. Here we demonstrate that proteins needed for rapid CtrA proteolysis in vivo form a phosphorylation-dependent and cyclic diguanylate (cdG)-dependent adaptor complex that accelerates CtrA degradation in vitro by ClpXP. The adaptor complex includes CpdR, a single-domain response regulator; PopA, a cdG-binding protein; and RcdA, a protein whose activity cannot be predicted. When CpdR is unphosphorylated and when PopA is bound to cdG, they work together with RcdA in an all-or-none manner to reduce the Km of CtrA proteolysis 10-fold. We further identified a set of amino acids in the receiver domain of CtrA that modulate its adaptor-mediated degradation in vitro and in vivo. Complex formation between PopA and CtrA depends on these amino acids, which reside on alpha-helix 1 of the CtrA receiver domain, and on cdG binding by PopA. These results reveal that each accessory factor plays an essential biochemical role in the regulated proteolysis of CtrA and demonstrate, to our knowledge, the first example of a multiprotein, cdG-dependent proteolytic adaptor.

Indexed as

Amino Acid SequenceBacterial ProteinsCaulobacter crescentusCell CycleCyclic GMPDNA-Binding ProteinsEndopeptidase ClpKineticsModels, MolecularMolecular Sequence DataPhosphorylationProtein Structure, TertiaryProteolysisSecond Messenger SystemsSequence Homology, Amino AcidTranscription FactorsBacterial Proteinsbis(3',5')-cyclic diguanylic acidCtrA protein, CaulobacterCyclic GMPDNA-Binding ProteinsEndopeptidase ClpTranscription Factors

Identifiers

PMID25197043
PMCPMC4191750

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.