Evidence map›Paper›PMID 25196843›Full record

ArticleThe Journal of biological chemistry2014

Protein/protein interactions in the mammalian heme degradation pathway: heme oxygenase-2, cytochrome P450 reductase, and biliverdin reductase.

Andrea L M Spencer, Ireena Bagai, Donald F Becker, Erik R P Zuiderweg, Stephen W Ragsdale

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrea L M SpencerFrom the Cellular and Molecular Biology Training Program and.
Ireena BagaiDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48103 and.
Donald F Beckerthe Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588.
Erik R P ZuiderwegDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48103 and zuiderwe@umich.edu.
Stephen W RagsdaleFrom the Cellular and Molecular Biology Training Program and Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48103 and sragsdal@umich.edu.
University of Michigan–Ann Arbor · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Redox Biology CenterP30GM103335 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2012 to 2016
$4.3M
Spectroelectrochemistry of the Novel PutA FlavoproteinR01GM061068 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2001 to 2015
$3.7M
Thiol/Disulfide Redox Regulation of Heme Oxygenase-2R01HL102662 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGSDALE, STEPHEN WILEY · 2010 to 2013
$2.2M
EMBRYONIC ORIGINS OF ATRIOVENTRICULAR CONDUCTIONF32HL010266 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI CHUCK, EMIL Y · 1999 to 2000
$38k
NHLBI NIH HHS HL 102662ANHLBI NIH HHS R01 HL102662NIGMS NIH HHS GM061068NIGMS NIH HHS P30 GM103335NIGMS NIH HHS P30GM103335NIGMS NIH HHS R01 GM061068NIGMS NIH HHS T32 GM007215NIGMS NIH HHS T32GM007215NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

Heme oxygenase (HO) catalyzes the rate-limiting step in the O2-dependent degradation of heme to biliverdin, CO, and iron with electrons delivered from NADPH via cytochrome P450 reductase (CPR). Biliverdin reductase (BVR) then catalyzes conversion of biliverdin to bilirubin. We describe mutagenesis combined with kinetic, spectroscopic (fluorescence and NMR), surface plasmon resonance, cross-linking, gel filtration, and analytical ultracentrifugation studies aimed at evaluating interactions of HO-2 with CPR and BVR. Based on these results, we propose a model in which HO-2 and CPR form a dynamic ensemble of complex(es) that precede formation of the productive electron transfer complex. The (1)H-(15)N TROSY NMR spectrum of HO-2 reveals specific residues, including Leu-201, near the heme face of HO-2 that are affected by the addition of CPR, implicating these residues at the HO/CPR interface. Alanine substitutions at HO-2 residues Leu-201 and Lys-169 cause a respective 3- and 22-fold increase in K(m) values for CPR, consistent with a role for these residues in CPR binding. Sedimentation velocity experiments confirm the transient nature of the HO-2 · CPR complex (K(d) = 15.1 μM). Our results also indicate that HO-2 and BVR form a very weak complex that is only captured by cross-linking. For example, under conditions where CPR affects the (1)H-(15)N TROSY NMR spectrum of HO-2, BVR has no effect. Fluorescence quenching experiments also suggest that BVR binds HO-2 weakly, if at all, and that the previously reported high affinity of BVR for HO is artifactual, resulting from the effects of free heme (dissociated from HO) on BVR fluorescence.

Indexed as

ApoproteinsChromatography, GelCoumarinsCross-Linking ReagentsCrystallography, X-RayDeuteriumFluorescenceHemeHeme Oxygenase (Decyclizing)HumansKineticsMagnetic Resonance SpectroscopyModels, MolecularMolecular WeightMutagenesisMutant ProteinsApoproteinsbiliverdin reductasecoumarinCoumarinsCross-Linking ReagentsDeuteriumHemeheme oxygenase-2Heme Oxygenase (Decyclizing)Mutant ProteinsNADPH-Ferrihemoprotein ReductaseOxidoreductases Acting on CH-CH Group DonorsCytochrome P450Electron Transfer ComplexEnzyme KineticsEnzyme MechanismHeme OxygenaseNuclear Magnetic Resonance (NMR)Protein/Protein Interaction

Identifiers

PMID25196843
PMCPMC4207996
OpenAlexW1992985039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.