Evidence map›Paper›PMID 25195903›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

Crystallization and preliminary X-ray analysis of the C-terminal fragment of Ski7 from Saccharomyces cerevisiae.

Ji-Young Lee, Si Hoon Park, Byung-Cheon Jeong, Hyun Kyu Song

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ji-Young LeeDepartment of Life Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 136-701, Republic of Korea.
Si Hoon ParkDepartment of Life Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 136-701, Republic of Korea.
Byung-Cheon JeongDepartment of Life Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 136-701, Republic of Korea.
Hyun Kyu SongDepartment of Life Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 136-701, Republic of Korea.
Korea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ski7 (superkiller protein 7) plays a critical role in the mRNA surveillance pathway. The C-terminal fragment of Ski7 (residues 520-747) from Saccharomyces cerevisiae was heterologously expressed in Escherichia coli and purified to homogeneity. It was successfully crystallized and preliminary X-ray data were collected to 2.0 Å resolution using synchrotron radiation. The crystal belonged to a trigonal space group, either P3121 or P3221, with unit-cell parameters a = b = 73.5, c = 83.6 Å. The asymmetric unit contains one molecule of the C-terminal fragment of Ski7 with a corresponding crystal volume per protein mass (VM) of 2.61 Å(3) Da(-1) and a solvent content of 52.8% by volume. The merging R factor is 6.6%. Structure determination by MAD phasing is under way.

Indexed as

Adaptor Proteins, Signal TransducingBase SequenceCrystallizationCrystallography, X-RayDNA PrimersElectrophoresis, Polyacrylamide GelPeptide FragmentsPolymerase Chain ReactionProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdaptor Proteins, Signal TransducingDNA PrimersPeptide FragmentsSaccharomyces cerevisiae ProteinsSKI7 protein, S cerevisiaemRNA surveillancenonstop decayRNA degradationSaccharomyces cerevisiaeSki7

Identifiers

PMID25195903
PMCPMC4157430
OpenAlexW2137355101

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.