Evidence map›Paper›PMID 25195051›Full record

ArticleNature structural & molecular biology2014

Visualization of recombination-mediated damage bypass by template switching.

Michele Giannattasio, Katharina Zwicky, Cindy Follonier, Marco Foiani, Massimo Lopes, Dana Branzei

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. RAD18- and BRCA1-dependent pathways promote cellular tolerance to the nucleoside analog ganciclovir.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
  7. Review
  8. ATAD5 functions as a regulatory platform for Ub-PCNA deubiquitination.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Generation and Repair of Postreplication Gaps in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  19. Article
  20. Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Michele Giannattasio1] Istituto Fondazione Italiana per la Ricerca sul Cancro (FIRC) di Oncologia Molecolare (IFOM), Milan, Italy. [2] Dipartimento di Bioscienze, Università degli Studi di Milano, Milan, Italy.
Katharina ZwickyInstitute of Molecular Cancer Research, University of Zürich, Zürich, Switzerland.
Cindy Follonier1] Institute of Molecular Cancer Research, University of Zürich, Zürich, Switzerland. [2].
Marco Foiani1] Istituto Fondazione Italiana per la Ricerca sul Cancro (FIRC) di Oncologia Molecolare (IFOM), Milan, Italy. [2] Dipartimento di Bioscienze, Università degli Studi di Milano, Milan, Italy.
Massimo LopesInstitute of Molecular Cancer Research, University of Zürich, Zürich, Switzerland.
Dana BranzeiIstituto Fondazione Italiana per la Ricerca sul Cancro (FIRC) di Oncologia Molecolare (IFOM), Milan, Italy.
FIRC Institute of Molecular Oncology · ITUniversity of Zurich · CH

Funding

European Research Council 242928Telethon GGP12160Telethon GGP12171
6 · The paper itself

Abstract

Template switching (TS) mediates damage bypass via a recombination-related mechanism involving PCNA polyubiquitination and polymerase δ-dependent DNA synthesis. Using two-dimensional gel electrophoresis and EM, here we characterize TS intermediates arising in Saccharomyces cerevisiae at a defined chromosome locus, identifying five major families of intermediates. Single-stranded DNA gaps of 150-200 nt, and not DNA ends, initiate TS by strand invasion. This causes reannealing of the parental strands and exposure of the nondamaged newly synthesized chromatid, which serves as a replication template for the other blocked nascent strand. Structures resembling double Holliday junctions, postulated to be central double-strand break-repair intermediates but so far visualized only in meiosis, mediate late stages of TS before being processed to hemicatenanes. Our results reveal the DNA transitions accounting for recombination-mediated DNA-damage tolerance in mitotic cells and replication under conditions of genotoxic stress.

Indexed as

DNA DamageDNA RepairRecombination, GeneticTemplates, GeneticChromatidsDNA, CruciformDNA, FungalDNA Polymerase IIIDNA ReplicationProliferating Cell Nuclear AntigenSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinationDNA, CruciformDNA, FungalDNA Polymerase IIIProliferating Cell Nuclear AntigenSaccharomyces cerevisiae Proteins

Identifiers

PMID25195051
PMCPMC4189914
OpenAlexW2019642759

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.