Evidence map›Paper›PMID 25195012›Full record

ArticleNature chemical biology2014

Solid-to-fluid DNA transition inside HSV-1 capsid close to the temperature of infection.

Udom Sae-Ueng, Dong Li, Xiaobing Zuo, Jamie B Huffman, Fred L Homa, Donald Rau, Alex Evilevitch

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  4. Temperature-induced DNA density transition in phage λ capsid revealed with contrast-matching SANS.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  8. Intranuclear HSV-1 DNA ejection induces major mechanical transformations suggesting mechanoprotection of nucleus integrity.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Udom Sae-Ueng1] Carnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA. [2].
Dong Li1] Carnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA. [2].
Xiaobing ZuoX-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois, USA.
Jamie B HuffmanDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Fred L HomaDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Donald RauLaboratory of Physical and Structural Biology, Program in Physical Biology, National Institutes of Health, Bethesda, Maryland, USA.
Alex Evilevitch1] Carnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA. [2] Lund University, Department of Biochemistry and Structural Biology, Lund, Sweden.
University of Pittsburgh · USArgonne National Laboratory · USCarnegie Mellon University · USNational Institutes of Health · US

Funding

Structure and Function of the Herpesvirus Capsid and its DNA-Packaging MachineryR01AI089803 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CONWAY, JAMES F., HOMA, FREDERICK L · 2011 to 2019
$4.0M
Assembly Forces And Recognition ReactionsZIAHD008747 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI RAU, DONALD · 2009 to 2015
$2.7M
Herpes Simplex Virus Capsid Assembly and DNA PackagingR01AI060836 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMA, FREDERICK L · 2006 to 2010
$1.6M
Herpes Simples Virus Capsid Assembly and DNA PackagingR56AI060836 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMA, FREDERICK L · 2011 to 2011
$379k
Intramural NIH HHS ZIA HD008747NIAID NIH HHS AI060836NIAID NIH HHS R01 AI060836NIAID NIH HHS R01 AI089803NIAID NIH HHS R56 AI060836
6 · The paper itself

Abstract

DNA in the human Herpes simplex virus type 1 (HSV-1) capsid is packaged to a tight density. This leads to tens of atmospheres of internal pressure responsible for the delivery of the herpes genome into the cell nucleus. In this study we show that, despite its liquid crystalline state inside the capsid, the DNA is fluid-like, which facilitates its ejection into the cell nucleus during infection. We found that the sliding friction between closely packaged DNA strands, caused by interstrand repulsive interactions, is reduced by the ionic environment of epithelial cells and neurons susceptible to herpes infection. However, variations in the ionic conditions corresponding to neuronal activity can restrict DNA mobility in the capsid, making it more solid-like. This can inhibit intranuclear DNA release and interfere with viral replication. In addition, the temperature of the human host (37 °C) induces a disordering transition of the encapsidated herpes genome, which reduces interstrand interactions and provides genome mobility required for infection.

Indexed as

Genome, ViralAnimalsCapsidCell NucleusChlorocebus aethiopsDNA, ViralHerpesvirus 1, HumanHumansKineticsNucleic Acid ConformationPhase TransitionTemperatureVero CellsVirus ReplicationDNA, Viral

Identifiers

PMID25195012
PMCPMC6528806
OpenAlexW2053188339

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.