Evidence map›Paper›PMID 25195011›Full record

ArticleNature chemical biology2014

A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics.

Apirat Chaikuad, Eliana M C Tacconi, Jutta Zimmer, Yanke Liang, Nathanael S Gray, Madalena Tarsounas, Stefan Knapp

Abstract read
In one paragraph

Article in Nature chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed.

  1. Article
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  4. Anti-Adipogenic Effects ofInternational journal of molecular sciences · 2026
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  8. Altered residence time as a cause of drug resistance.Current opinion in structural biology · 2026
    Review
  9. Article
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  13. Article
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  15. Article
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  18. Review
  19. Article
  20. Review

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Apirat ChaikuadStructural Genomics Consortium, University of Oxford, Old Road Campus Research Building, Oxford, UK.
Eliana M C TacconiTelomere and Genome Stability Group, The Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Old Road Campus Research Building, Oxford, UK.
Jutta ZimmerTelomere and Genome Stability Group, The Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Old Road Campus Research Building, Oxford, UK.
Yanke LiangDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Department of Cancer Biology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Nathanael S GrayDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Department of Cancer Biology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000000153547403
Madalena TarsounasTelomere and Genome Stability Group, The Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Old Road Campus Research Building, Oxford, UK.
Stefan Knapp1] Structural Genomics Consortium, University of Oxford, Old Road Campus Research Building, Oxford, UK. [2] Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC, USA. [3] Target Discovery Institute, University of Oxford, Nuffield Department of Medicine Research Building, Oxford, UK.

Funding

Cancer Research UK 17201CIHRMedical Research CouncilWellcome Trust 092809Wellcome Trust 092809/Z/10/Z
6 · The paper itself

Abstract

Activation of the ERK pathway is a hallmark of cancer, and targeting of upstream signaling partners led to the development of approved drugs. Recently, SCH772984 has been shown to be a selective and potent ERK1/2 inhibitor. Here we report the structural mechanism for its remarkable selectivity. In ERK1/2, SCH772984 induces a so-far-unknown binding pocket that accommodates the piperazine-phenyl-pyrimidine decoration. This new binding pocket was created by an inactive conformation of the phosphate-binding loop and an outward tilt of helix αC. In contrast, structure determination of SCH772984 with the off-target haspin and JNK1 revealed two canonical but distinct type I binding modes. Notably, the new binding mode with ERK1/2 was associated with slow binding kinetics in vitro as well as in cell-based assay systems. The described binding mode of SCH772984 with ERK1/2 enables the design of a new type of specific kinase inhibitors with prolonged on-target activity.

Indexed as

Antineoplastic AgentsBinding SitesCell Line, TumorEnzyme InhibitorsGene ExpressionGene Expression Regulation, NeoplasticHumansIndazolesIntracellular Signaling Peptides and ProteinsKineticsMAP Kinase Signaling SystemMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Mitogen-Activated Protein Kinase 8PiperazinesProtein BindingAntineoplastic AgentsEnzyme InhibitorsHASPIN protein, humanIndazolesIntracellular Signaling Peptides and ProteinsMAPK1 protein, humanMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Mitogen-Activated Protein Kinase 8PiperazinesProtein Serine-Threonine KinasesRecombinant ProteinsSCH772984

Identifiers

PMID25195011
PMCPMC4687050

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.