Evidence map›Paper›PMID 25192440›Full record

ArticleAmerican journal of respiratory cell and molecular biology2015

Glucocorticoid genes and the developmental origins of asthma susceptibility and treatment response.

Sunita Sharma, Alvin T Kho, Divya Chhabra, Weiliang Qiu, Roger Gaedigk, Carrie A Vyhlidal, J Steven Leeder, Albino Barraza-Villarreal, Stephanie J London, Frank Gilliland and 3 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06385236 (Leveraging Pharmacogenomics in Asthma for Predication, Mechanism and Endotyping), which is not on this map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06385236 phase4recruitingnot on this mapstarted 2024, after this paper: background citation

Leveraging Pharmacogenomics in Asthma for Predication, Mechanism and Endotyping

TypeinterventionalSponsorUniversity of California, San DiegoRan2024 to 2028Enrolled120ConditionsModerate to Severe AsthmaArmsDupilumab, Benralizumab
3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Cytotoxic CD4Med (New York, N.Y.) · 2023
    Article
  3. Heterogeneity of Treatment Response to Asthma.Advances in experimental medicine and biology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Analysis of Glucocorticoid-Related Genes RevealJournal of the Endocrine Society · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Prenatal Stress, Prematurity, and Asthma.Obstetrical & gynecological survey · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Sunita Sharma1 Channing Division of Network Medicine and.
Alvin T Kho
Divya Chhabra
Weiliang Qiu
Roger Gaedigk
Carrie A Vyhlidal
J Steven Leeder
Albino Barraza-Villarreal
Stephanie J London
Frank Gilliland
Benjamin A Raby
Scott T Weiss
Kelan G Tantisira
Brigham and Women's Hospital · USChildren's Mercy Hospital · USInstituto Nacional de Salud Pública · MXNational Institutes of Health · USUniversity of Southern California · US

Funding

Translational Research Support CoreP30ES007048 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Joseph Leo Wiemels · 1996 to 2026
$46.4M
THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
The Asthma BioRepository for Integrative Genomics ResearchRC2HL101543 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER, WEISS, SCOTT T · 2009 to 2010
$8.3M
Genetic Analyses For Epidemiologic Studies Of Respiratory DiseaseZIAES025045 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI LONDON, STEPHANIE · 2009 to 2025
$7.3M
Genetic And Environmental Factors In Childhood Respiratory HealthZIAES049019 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI LONDON, STEPHANIE · 2009 to 2025
$6.8M
Genetics and Gene Expression Profiling in AsthmaR01HL086601 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER · 2007 to 2015
$6.8M
Genetics and Environment in Adult Respiratory, Allergic and Cardiac diseaseZIAES043012 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI LONDON, STEPHANIE · 2009 to 2025
$6.4M
INTEGRATIVE PHARMACOGENOMICS OF LEUKOTRIENE INHIBITION IN ASTHMAR01HL092197 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2009 to 2013
$3.6M
INTRAUTERINE SMOKE EXPOSURE AND ASTHMA: GENOMIC ORIGINSR01HL097144 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI KOBZIK, LESTER, WEISS, SCOTT T · 2009 to 2013
$2.9M
A Developmental Basis for Chronic Obstructive Lung DiseaseK25HL091124 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI KHO, ALVIN THONG-JUAK · 2008 to 2012
$743k
INTEGRATIVE GENOMICS AND THE FETAL ORIGINS OF IMPAIRED LUNG FUNCTIONK08HL096833 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SHARMA, SUNITA · 2010 to 2013
$547k
Intramural NIH HHS ZIA ES049019NHLBI NIH HHS K08 HL096833NHLBI NIH HHS K25 HL091124NHLBI NIH HHS R01 HL086601NHLBI NIH HHS R01 HL092197NHLBI NIH HHS R01 HL097144NHLBI NIH HHS RC2 HL101543NHLBI NIH HHS U01 HL065899NIEHS NIH HHS ES049019NIEHS NIH HHS P30 ES007048
6 · The paper itself

Abstract

Antenatal corticosteroids enhance lung maturation. However, the importance of glucocorticoid genes on early lung development, asthma susceptibility, and treatment response remains unknown. We investigated whether glucocorticoid genes are important during lung development and their role in asthma susceptibility and treatment response. We identified genes that were differentially expressed by corticosteroids in two of three genomic datasets: lymphoblastoid cell lines of participants in the Childhood Asthma Management Program, a glucocorticoid chromatin immunoprecipitation/RNA sequencing experiment, or a murine model; these genes made up the glucocorticoid gene set (GCGS). Using gene expression profiles from 38 human fetal lungs and C57BL/6J murine fetal lungs, we identified developmental genes that were in the top 5% of genes contributing to the top three principal components (PCs) most highly associated with post-conceptional age. Glucocorticoid genes that were enriched in this set of developmental genes were then included in the developmental glucocorticoid gene set (DGGS). We then investigated whether glucocorticoid genes are important during lung development, and their role in asthma susceptibility and treatment response. A total of 232 genes were included in the GCGS. Analysis of gene expression demonstrated that glucocorticoid genes were enriched in lung development (P = 7.02 × 10(-26)). The developmental GCGS was enriched for genes that were differentially expressed between subjects with asthma and control subjects (P = 4.26 × 10(-3)) and were enriched after treatment of subjects with asthma with inhaled corticosteroids (P < 2.72 × 10(-4)). Our results show that glucocorticoid genes are overrepresented among genes implicated in fetal lung development. These genes influence asthma susceptibility and treatment response, suggesting their involvement in the early ontogeny of asthma.

Indexed as

Gene Expression ProfilingAdrenal Cortex HormonesAnimalsAnimals, NewbornAsthmaCase-Control StudiesCCAAT-Enhancer-Binding Protein-deltaDatabases, GeneticDexamethasoneGene Expression Regulation, DevelopmentalGenetic MarkersGenetic Predisposition to DiseaseHumansLungMiceMice, Inbred C57BLAdrenal Cortex HormonesCCAAT-Enhancer-Binding Protein-deltaCEBPD protein, humanDDIT4 protein, humanDexamethasoneGenetic MarkersTacrolimus Binding Protein 5Tacrolimus Binding ProteinsTranscription Factorsasthmaasthma treatmentglucocorticoid geneslung development

Identifiers

PMID25192440
PMCPMC4491138
OpenAlexW2104036976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.