Evidence map›Paper›PMID 25192068›Full record

ArticlePloS one2014

Crystal structure of transglutaminase 2 with GTP complex and amino acid sequence evidence of evolution of GTP binding site.

Tae-Ho Jang, Dong-Sup Lee, Kihang Choi, Eui Man Jeong, In-Gyu Kim, Young Whan Kim, Jung Nyeo Chun, Ju-Hong Jeon, Hyun Ho Park

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

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  8. Structural and mechanistic analysis of CaProceedings of the National Academy of Sciences of the United States of America · 2024
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  11. The Role of Transglutaminase 2 in Cancer: An Update.International journal of molecular sciences · 2024
    Review
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  17. The Impact ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Tae-Ho JangSchool of Biotechnology, Yeungnam University, Gyeongsan, South Korea; Graduate School of Biochemistry, Yeungnam University, Gyeongsan, South Korea.
Dong-Sup LeeDepartment of Physiology and Biophysics at Seoul National University College of Medicine, Seoul, South Korea.
Kihang ChoiDepartment of Chemistry, Korea University, Seoul, South Korea.
Eui Man JeongDepartment of Biochemistry and Molecular Biology/Aging and Apoptosis Research Center (AARC), Seoul National University College of Medicine, Seoul, South Korea.
In-Gyu KimDepartment of Biochemistry and Molecular Biology/Aging and Apoptosis Research Center (AARC), Seoul National University College of Medicine, Seoul, South Korea.
Young Whan KimDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine and Lung Institute of Medical Research Center, Seoul National University College of Medicine, Seoul, South Korea.
Jung Nyeo ChunDepartment of Physiology, Department of Biomedical Sciences, and Institute of Dermatological Science, Seoul National University College of Medicine, Seoul, South Korea.
Ju-Hong JeonDepartment of Physiology, Department of Biomedical Sciences, and Institute of Dermatological Science, Seoul National University College of Medicine, Seoul, South Korea.
Hyun Ho ParkSchool of Biotechnology, Yeungnam University, Gyeongsan, South Korea; Graduate School of Biochemistry, Yeungnam University, Gyeongsan, South Korea.
Seoul National University · KRSeoul National University Hospital · KRYeungnam University · KRKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transglutaminase2 (TG2) is a multi-functional protein involved in various cellular processes, including apoptosis, differentiation, wound healing, and angiogenesis. The malfunction of TG2 causes many human disease including inflammatory disease, celiac disease, neurodegenerative diseases, tissue fibrosis, and cancers. Protein cross-linking activity, which is representative of TG2, is activated by calcium ions and suppressed by GTP. Here, we elucidated the structure of TG2 in complex with its endogenous inhibitor, GTP. Our structure showed why GTP is the optimal nucleotide for interacting with and inhibiting TG2. In addition, sequence comparison provided information describing the evolutionary scenario of GTP usage for controlling the activity of TG2.

Indexed as

Amino Acid SequenceBinding SitesCrystallography, X-RayEvolution, MolecularGTP-Binding ProteinsGuanosine TriphosphateHumansModels, MolecularMolecular Sequence DataProtein BindingProtein Glutamine gamma Glutamyltransferase 2Protein Interaction Domains and MotifsProtein Structure, QuaternaryProtein Structure, SecondarySequence Homology, Amino AcidTransglutaminasesGTP-Binding ProteinsGuanosine TriphosphateProtein Glutamine gamma Glutamyltransferase 2Transglutaminases

Identifiers

PMID25192068
PMCPMC4156391
OpenAlexW1964011057

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.