Evidence map›Paper›PMID 25191654›Full record

ArticleFrontiers in bioengineering and biotechnology2014

Systems biology of cancer: a challenging expedition for clinical and quantitative biologists.

Ilya Korsunsky, Kathleen McGovern, Tom LaGatta, Loes Olde Loohuis, Terri Grosso-Applewhite, Nancy Griffeth, Bud Mishra

Abstract read
In one paragraph

Article in Frontiers in bioengineering and biotechnology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Origin of biomolecular games: deception and molecular evolution.Journal of the Royal Society, Interface · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ilya KorsunskyDepartment of Computer Science, Courant Institute, New York University , New York, NY , USA.
Kathleen McGovernDepartment of Mathematics and Statistics, Hunter College, City University of New York , New York, NY , USA.
Tom LaGattaDepartment of Mathematics, Courant Institute, New York University , New York, NY , USA.
Loes Olde LoohuisDepartment of Computer Science, The Graduate Center, City University of New York , New York, NY , USA.
Terri Grosso-ApplewhiteDepartment of Computer Science, The Graduate Center, City University of New York , New York, NY , USA.
Nancy GriffethDepartment of Mathematics and Computer Science, Lehman College, City University of New York , New York, NY , USA.
Bud MishraDepartment of Computer Science, Courant Institute, New York University , New York, NY , USA ; Department of Mathematics, Courant Institute, New York University , New York, NY , USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A systems-biology approach to complex disease (such as cancer) is now complementing traditional experience-based approaches, which have typically been invasive and expensive. The rapid progress in biomedical knowledge is enabling the targeting of disease with therapies that are precise, proactive, preventive, and personalized. In this paper, we summarize and classify models of systems biology and model checking tools, which have been used to great success in computational biology and related fields. We demonstrate how these models and tools have been used to study some of the twelve biochemical pathways implicated in but not unique to pancreatic cancer, and conclude that the resulting mechanistic models will need to be further enhanced by various abstraction techniques to interpret phenomenological models of cancer progression.

Indexed as

cancer pathway modelingdynamical modelsmolecular modelingmulti-scale modelingnew algorithms

Identifiers

PMID25191654
PMCPMC4137540

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.