Evidence map›Paper›PMID 25190800›Full record

ArticleThe Journal of biological chemistry2014

Identification of a face enhancer reveals direct regulation of LIM homeobox 8 (Lhx8) by wingless-int (WNT)/β-catenin signaling.

André Landin Malt, Jeffry M Cesario, Zuojian Tang, Stuart Brown, Juhee Jeong

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. WNK Kinases in Development and Disease.Current topics in developmental biology · 2017
    Review
  8. New insights into craniofacial malformations.Human molecular genetics · 2015
    Review
  9. Lhx6 and Lhx8: cell fate regulators and beyond.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

André Landin MaltDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, New York 10010 and.
Jeffry M CesarioDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, New York 10010 and.
Zuojian TangCenter for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York 10016.
Stuart BrownCenter for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York 10016.
Juhee JeongDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, New York 10010 and. Electronic address: jj78@nyu.edu.
New York University · US

Funding

Function and regulation of Lhx genes in craniofacial developmentR00DE019486 · NIDCR · NEW YORK UNIVERSITY · PI JEONG, JUHEE · 2011 to 2013
$728k
NIDCR NIH HHS R00 DE019486
6 · The paper itself

Abstract

Development of the mammalian face requires a large number of genes that are expressed with spatio-temporal specificity, and transcriptional regulation mediated by enhancers plays a key role in the precise control of gene expression. Using chromatin immunoprecipitation for a histone marker of active enhancers, we generated a genome-wide map of candidate enhancers from the maxillary arch (primordium for the upper jaw) of mouse embryos. Furthermore, we confirmed multiple novel craniofacial enhancers near the genes implicated in human palate defects through functional assays. We characterized in detail one of the enhancers (Lhx8_enh1) located upstream of Lhx8, a key regulatory gene for craniofacial development. Lhx8_enh1 contained an evolutionarily conserved binding site for lymphoid enhancer factor/T-cell factor family proteins, which mediate the transcriptional regulation by the WNT/β-catenin signaling pathway. We demonstrated in vitro that WNT/β-catenin signaling was indeed essential for the expression of Lhx8 in the maxillary arch cells and that Lhx8_enh1 was a direct target of the WNT/β-catenin pathway. Together, we uncovered a molecular mechanism for the regulation of Lhx8, and we provided valuable resources for further investigation into the gene regulatory network of craniofacial development.

Indexed as

Gene Expression Regulation, DevelopmentalWnt Signaling PathwayAnimalsBase SequenceBinding SitesBranchial RegionCell LineChromosome MappingConsensus SequenceGene Regulatory NetworksHistonesHumansLIM-Homeodomain ProteinsMaxillaMesodermMice, Inbred C3HHistonesLIM homeobox protein 8LIM-Homeodomain ProteinsTranscription FactorsChIP Sequencing (ChIP-seq)Craniofacial DevelopmentFirst Pharyngeal ArchTranscription EnhancerTranscription FactorWnt Pathway

Identifiers

PMID25190800
PMCPMC4215213
OpenAlexW1974258783

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.