Evidence map›Paper›PMID 25190518›Full record

ArticleThe EMBO journal2014

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.

Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it, 128 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. The Intertwined Role of 8-oxodG and G4 in Transcription Regulation.International journal of molecular sciences · 2023
    Review
  16. Review
  17. Article
  18. Effects of G-Quadruplex-Binding Plant Secondary Metabolites onInternational journal of molecular sciences · 2022
    Article
  19. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Davide SchiavoneMedical Research Council Laboratory of Molecular Biology, Cambridge, UK.
Guillaume GuilbaudMedical Research Council Laboratory of Molecular Biology, Cambridge, UK.
Pierre MuratDepartment of Chemistry, University of Cambridge, Cambridge, UK.
Charikleia PapadopoulouMedical Research Council Laboratory of Molecular Biology, Cambridge, UK.
Peter SarkiesMedical Research Council Laboratory of Molecular Biology, Cambridge, UK The Gurdon Institute, Cambridge, UK.
Marie-Noëlle PrioleauInstitut Jacques Monod, Université Paris Diderot-Paris 7, Paris, France.
Shankar BalasubramanianDepartment of Chemistry, University of Cambridge, Cambridge, UK.
Julian E SaleMedical Research Council Laboratory of Molecular Biology, Cambridge, UK jes@mrc-lmb.cam.ac.uk.
Medical Research Council · GBUniversity of Cambridge · GBMRC Laboratory of Molecular Biology · GBUniversité Paris Cité · FR

Funding

Cancer Research UK 11961Medical Research Council MC_U105178808Medical Research Council U105178808Wellcome Trust 092096
6 · The paper itself

Abstract

REV1-deficient chicken DT40 cells are compromised in replicating G quadruplex (G4)-forming DNA. This results in localised, stochastic loss of parental chromatin marks and changes in gene expression. We previously proposed that this epigenetic instability arises from G4-induced replication fork stalls disrupting the accurate propagation of chromatin structure through replication. Here, we test this model by showing that a single G4 motif is responsible for the epigenetic instability of the BU-1 locus in REV1-deficient cells, despite its location 3.5 kb from the transcription start site (TSS). The effect of the G4 is dependent on it residing on the leading strand template, but is independent of its in vitro thermal stability. Moving the motif to more than 4 kb from the TSS stabilises expression of the gene. However, loss of histone modifications (H3K4me3 and H3K9/14ac) around the transcription start site correlates with the position of the G4 motif, expression being lost only when the promoter is affected. This supports the idea that processive replication is required to maintain the histone modification pattern and full transcription of this model locus.

Indexed as

G-QuadruplexesNucleotidyltransferasesAnimalsCell LineChickensDNA ReplicationEpigenesis, GeneticGenetic LociGenomic InstabilityHistonesProtein Processing, Post-TranslationalTranscription, GeneticHistonesNucleotidyltransferasesepigenetic memoryG quadruplexhistone modificationsreplicationREV1

Identifiers

PMID25190518
PMCPMC4282387
OpenAlexW2067613039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.