Evidence map›Paper›PMID 25190485›Full record

ArticleNature communications2014

Negative regulation of NF-κB activity by brain-specific TRIpartite Motif protein 9.

Mude Shi, Hyelim Cho, Kyung-Soo Inn, Aerin Yang, Zhen Zhao, Qiming Liang, Gijs A Versteeg, Samad Amini-Bavil-Olyaee, Lai-Yee Wong, Berislav V Zlokovic and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Mude ShiDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Hyelim ChoDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Kyung-Soo Inn1] Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA [2] Department of Pharmaceutical Science, College of Pharmacy, Kyung Hee University, 1 Hoegl-dong, Dongdaemun-gu, Seoul 130-701, Republic of Korea.
Aerin YangDepartment of Chemistry, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea.
Zhen ZhaoDepartment of Physiology and Biophysics, Keck School of Medicine, Zilkha Neurogenetic Institute, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Qiming LiangDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Gijs A Versteeg1] Max F. Perutz Laboratories, Dr-Bohr-Gasse 9, Wien, Vienna 1030, Austria [2] Department of Microbiology, Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.
Samad Amini-Bavil-OlyaeeDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Lai-Yee WongDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Berislav V ZlokovicDepartment of Physiology and Biophysics, Keck School of Medicine, Zilkha Neurogenetic Institute, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
Hee-Sung ParkDepartment of Chemistry, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea.
Adolfo García-Sastre1] Department of Microbiology, Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA [2] Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, 1468 Madison Avenue, New York, New York 10029, USA.
Jae U Jung1] Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA [2] Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, HMR Room 401, 2011 Zonal Avenue, Los Angeles, California 90033, USA.
University of Southern California · USKorea Advanced Institute of Science and Technology · KRIcahn School of Medicine at Mount Sinai · USMax Perutz Labs · AT

Funding

Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI YOUNG, JOHN A T · 2010 to 2014
$20.4M
TRIM mediated host antiviral responses during influenza virus infectionsU19AI083025 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HA, TAEKJIP · 2009 to 2013
$10.0M
Roles of the K3 and K5 in KSHV Persistence and PathogenesisP01CA180779 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2013 to 2017
$7.3M
Molecular Basis of KSHV PathogenesisR01CA082057 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 1999 to 2016
$5.1M
MOLECULAR BASIS FOR HERPESVIRUS SAIMIRI ONCOGENICITYR01CA031363 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 1985 to 2014
$4.9M
Role of viral BCI-2 mediated anti-apoptosis and-autophagyR01AI073099 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2007 to 2017
$4.3M
KSHV Epigenetic RegulationR01DE023926 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2013 to 2024
$4.2M
KSHV RTA: more than viral replicationR01CA115284 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2005 to 2015
$3.1M
TRIM9-mediated anti-viral immune pathwayR01AI116585 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OU, J.-H. JAMES · 2015 to 2019
$2.3M
When Autophagy Meets PhagocytosisR01HL110609 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2011 to 2015
$2.0M
NCI NIH HHS CA082057NCI NIH HHS CA115284NCI NIH HHS CA180779NCI NIH HHS CA31363NCI NIH HHS P01 CA180779NCI NIH HHS R01 CA031363NCI NIH HHS R01 CA082057NCI NIH HHS R01 CA115284NHLBI NIH HHS HL110609NHLBI NIH HHS R01 HL110609NIAID NIH HHS AI073099NIAID NIH HHS AI083025NIAID NIH HHS AI090935NIAID NIH HHS AI105809NIAID NIH HHS P01 AI090935NIAID NIH HHS R01 AI073099NIAID NIH HHS R01 AI116585NIAID NIH HHS U19 AI083025NIDCR NIH HHS DE023926NIDCR NIH HHS R01 DE023926
6 · The paper itself

Abstract

The TRIpartite Motif (TRIM) family of RING-domain-containing proteins participate in a variety of cellular functions. The β-transducin repeat-containing protein (β-TrCP), a component of the Skp-Cullin-F-box-containing (SCF) E3 ubiquitin ligase complex, recognizes the NF-κB inhibitor IκBα and precursor p100 for proteasomal degradation and processing, respectively. β-TrCP thus plays a critical role in both canonical and non-canonical NF-κB activation. Here we report that TRIM9 is a negative regulator of NF-κB activation. Interaction between the phosphorylated degron motif of TRIM9 and the WD40 repeat region of β-TrCP prevented β-TrCP from binding its substrates, stabilizing IκBα and p100 and thereby blocking NF-κB activation. Consequently, expression or depletion of the TRIM9 gene significantly affected NF-κB-induced inflammatory cytokine production. This study not only elucidates a mechanism for TRIM9-mediated regulation of the β-TrCP SCF complex activity but also identifies TRIM9 as a brain-specific negative regulator of the NF-κB pro-inflammatory signalling pathway.

Indexed as

Animalsbeta-Transducin Repeat-Containing ProteinsBrainDNA PrimersEnzyme-Linked Immunosorbent AssayGene Knockdown TechniquesHEK293 CellsHeLa CellsHumansImmunoblottingImmunoprecipitationMass SpectrometryMicroscopy, ConfocalNerve Tissue ProteinsNF-kappa BPlasmidsbeta-Transducin Repeat-Containing ProteinsDNA PrimersNerve Tissue ProteinsNF-kappa BRNA, Small InterferingTRIM9 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID25190485
PMCPMC4157316
OpenAlexW2094920145

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.