Evidence map›Paper›PMID 25189875›Full record

ArticleGenetics2014

Global regulation of a differentiation MAPK pathway in yeast.

Colin A Chavel, Lauren M Caccamise, Boyang Li, Paul J Cullen

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
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  13. Article
  14. Impact of Fungal MAPK Pathway Targets on the Cell Wall.Journal of fungi (Basel, Switzerland) · 2018
    Article
  15. Frontiers in microbiology · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Spatial landmarks regulate a Cdc42-dependent MAPK pathway to control differentiation and the response to positional compromise.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Colin A ChavelDepartment of Biological Sciences, State University of New York, Buffalo, New York 14260-1300.
Lauren M CaccamiseDepartment of Biological Sciences, State University of New York, Buffalo, New York 14260-1300.
Boyang LiDepartment of Biological Sciences, State University of New York, Buffalo, New York 14260-1300.
Paul J CullenDepartment of Biological Sciences, State University of New York, Buffalo, New York 14260-1300 pjcullen@buffalo.edu.ORCID http://orcid.org/0000-0002-6703-1480
University at Buffalo, State University of New York · US

Funding

Control of MAPK Signaling by Cell Polarity ProteinsR01GM098629 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES · 2011 to 2024
$4.4M
NIGMS NIH HHS GM098629NIGMS NIH HHS R01 GM098629
6 · The paper itself

Abstract

Cell differentiation requires different pathways to act in concert to produce a specialized cell type. The budding yeast Saccharomyces cerevisiae undergoes filamentous growth in response to nutrient limitation. Differentiation to the filamentous cell type requires multiple signaling pathways, including a mitogen-activated protein kinase (MAPK) pathway. To identify new regulators of the filamentous growth MAPK pathway, a genetic screen was performed with a collection of 4072 nonessential deletion mutants constructed in the filamentous (Σ1278b) strain background. The screen, in combination with directed gene-deletion analysis, uncovered 97 new regulators of the filamentous growth MAPK pathway comprising 40% of the major regulators of filamentous growth. Functional classification extended known connections to the pathway and identified new connections. One function for the extensive regulatory network was to adjust the activity of the filamentous growth MAPK pathway to the activity of other pathways that regulate the response. In support of this idea, an unregulated filamentous growth MAPK pathway led to an uncoordinated response. Many of the pathways that regulate filamentous growth also regulated each other's targets, which brings to light an integrated signaling network that regulates the differentiation response. The regulatory network characterized here provides a template for understanding MAPK-dependent differentiation that may extend to other systems, including fungal pathogens and metazoans.

Indexed as

Gene Expression Regulation, EnzymologicGene Expression Regulation, FungalCell DifferentiationGenetic Association StudiesMAP Kinase Signaling SystemMitogen-Activated Protein KinasesMorphogenesisSaccharomyces cerevisiaeMitogen-Activated Protein Kinasesnetwork hubsresponse coordinationsignal coordinationsignal integrationsignal transduction

Identifiers

PMID25189875
PMCPMC4224168
OpenAlexW2162827414

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.