Evidence map›Paper›PMID 25189652›Full record

ArticleMolecular biology reports2014

Investigation of key miRNAs and target genes in bladder cancer using miRNA profiling and bioinformatic tools.

Kemal Murat Canturk, Muhsin Ozdemir, Cavit Can, Setenay Öner, Ramazan Emre, Huseyin Aslan, Oguz Cilingir, Evrim Ciftci, Fatih Mehmet Celayir, Ozgur Aldemir and 2 more

Abstract read
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In one paragraph

Article in Molecular biology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Profiles of urinal exosomal miRNAs derived from bladder cancer.Central European journal of urology · 2024
    Article
  3. Diagnostic panel of serum miR-125b-5p, miR-182-5p, and miR-200c-3p as non-invasive biomarkers for urothelial bladder cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Article
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  11. Review
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  15. Phospholipase C-ε regulates bladder cancer cells via ATM/EXO1.American journal of cancer research · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Expression of miR-195 and MEK1 in patients with bladder cancer and their relationship to prognosis.International journal of clinical and experimental pathology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Kemal Murat CanturkMinistry of Justice, Department of Biology, Council of Forensic Medicine, Istanbul, Turkey, drmuratcanturk@yahoo.com.
Muhsin Ozdemir
Cavit Can
Setenay Öner
Ramazan Emre
Huseyin Aslan
Oguz Cilingir
Evrim Ciftci
Fatih Mehmet Celayir
Ozgur Aldemir
Mustafa Özen
Sevilhan Artan
Eskişehir Osmangazi University · TRMinistry of Justice · TRIstanbul University-Cerrahpaşa · TRMustafa Kemal University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the association of several miRNAs with bladder cancer, little is known about the miRNAs' regulatory networks. In this study, we aimed to construct potential networks of bladder-cancer-related miRNAs and their known target genes using miRNA expression profiling and bioinformatics tools and to investigate potential key molecules that might play roles in bladder cancer regulatory networks. Global miRNA expression profiles were obtained using microarray followed by RT-qPCR validation using two randomly selected miRNAs. Known targets of deregulated miRNAs were utilized using DIANA-TarBase database v6.0. The incorporation of deregulated miRNAs and target genes into KEGG pathways were utilized using DIANA-mirPath software. To construct potential miRNA regulatory networks, the overlapping parts of three selected KEGG pathways were visualized by Cytoscape software. We finally gained 19 deregulated miRNAs, including 5 ups- and 14 down regulated in 27 bladder-cancer tissue samples and 8 normal urothelial tissue samples. The enrichment results of deregulated miRNAs and known target genes showed that most pathways were related to cancer or cell signaling pathways. We determined the hub CDK6, BCL2, E2F3, PTEN, MYC, RB, and ERBB3 target genes and hub hsa-let-7c, hsa-miR-195-5p, hsa-miR-141-3p, hsa-miR-26a-5p, hsa-miR-23b-3p, and hsa-miR-125b-5p miRNAs of the constructed networks. These findings provide new insights into the bladder cancer regulatory networks and give us a hypothesis that hsa-let-7c, hsa-miR-195-5p, and hsa-miR-125b-5p, along with CDK4 and CDK6 genes might exist in the same bladder cancer pathway. Particularly, hub miRNAs and genes might be potential biomarkers for bladder cancer clinics.

Indexed as

Gene Regulatory NetworksComputational BiologyCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6Gene Expression ProfilingGene Expression Regulation, NeoplasticGenetic Association StudiesHumansMicroRNAsSoftwareUrinary Bladder NeoplasmsCDK4 protein, humanCDK6 protein, humanCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6MicroRNAs

Identifiers

PMID25189652
OpenAlexW2038477547

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.