Evidence map›Paper›PMID 25188357›Full record

ArticlePloS one2014

Salinity and bacterial diversity: to what extent does the concentration of salt affect the bacterial community in a saline soil?

Loredana Canfora, Giovanni Bacci, Flavia Pinzari, Giuseppe Lo Papa, Carmelo Dazzi, Anna Benedetti

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors.

Loredana CanforaConsiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo studio delle relazioni tra Pianta e Suolo, Roma, Italy.
Giovanni BacciConsiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo studio delle relazioni tra Pianta e Suolo, Roma, Italy; Department of Biology, University of Florence, Florence, Italy.
Flavia PinzariConsiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo studio delle relazioni tra Pianta e Suolo, Roma, Italy.
Giuseppe Lo PapaDipartimento di Scienze Agrarie e Forestali, Università degli Studi di Palermo, Palermo, Italy.
Carmelo DazziDipartimento di Scienze Agrarie e Forestali, Università degli Studi di Palermo, Palermo, Italy.
Anna BenedettiConsiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo studio delle relazioni tra Pianta e Suolo, Roma, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, the evaluation of soil characteristics was coupled with a pyrosequencing analysis of the V2-V3 16S rRNA gene region in order to investigate the bacterial community structure and diversity in the A horizon of a natural saline soil located in Sicily (Italy). The main aim of the research was to assess the organisation and diversity of microbial taxa using a spatial scale that revealed physical and chemical heterogeneity of the habitat under investigation. The results provided information on the type of distribution of different bacterial groups as a function of spatial gradients of soil salinity and pH. The analysis of bacterial 16S rRNA showed differences in bacterial composition and diversity due to a variable salt concentration in the soil. The bacterial community showed a statistically significant spatial variability. Some bacterial phyla appeared spread in the whole area, whatever the salinity gradient. It emerged therefore that a patchy saline soil can not contain just a single microbial community selected to withstand extreme osmotic phenomena, but many communities that can be variously correlated to one or more environmental parameters. Sequences have been deposited to the SRA database and can be accessed on ID Project PRJNA241061.

Indexed as

BacteriaPhylogenyRNA, Ribosomal, 16SSalinitySaltsSoil MicrobiologyRNA, Ribosomal, 16SSalts

Identifiers

PMID25188357
PMCPMC4154724

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.