Evidence map›Paper›PMID 25188320›Full record

ArticleBiochemistry2014

Origin of product selectivity in a prenyl transfer reaction from the same intermediate: exploration of multiple FtmPT1-catalyzed prenyl transfer pathways.

Li-Li Pan, Yue Yang, Kenneth M Merz

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Li-Li PanQuantum Theory Project and Department of Chemistry, University of Florida , Gainesville, Florida 32611, United States.
Yue Yang
Kenneth M Merz
Lawrence Livermore National Laboratory · USMichigan State University · USUniversity of Florida · US

Funding

Mettalloenzyme Structure/FunctionR01GM044974 · NIGMS · UNIVERSITY OF FLORIDA · PI MERZ, KENNETH M. · 1997 to 2010
$2.0M
The Bioinorganic Chemistry of Nickel: The UreasesR01GM066859 · NIGMS · UNIVERSITY OF FLORIDA · PI DEUMENS, ERIK · 2003 to 2011
$1.9M
THEORETICAL STUDY--METALLOENZYME STRUCTURE AND FUNCTIONR29GM044974 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI MERZ, KENNETH M · 1991 to 1995
–
NIGMS NIH HHS GM044974NIGMS NIH HHS GM066859
6 · The paper itself

Abstract

FtmPT1 is a fungal indole prenyltransferase that catalyzes the reaction of tryptophan derivatives with dimethylallyl pyrophosphate to form various biologically active compounds. Herein, we describe detailed studies of FtmPT1 catalysis involving dimethylallyl pyrophosphate and Brevianamide F following the native pathway (yielding Tryprostatin B) and an alternate pathway observed in the Gly115Thr mutant of FtmPT1 yielding a novel cyclized product. Importantly, these two products arise from the same intermediate state, meaning that a step other than the cleavage of the dimethylallyl pyrophosphate (DMAPP; C-O) bond is differentiating between the two product reaction channels. From detailed potential of mean force (PMF) and two-dimensional PMF analyses, we conclude that the rate-limiting step is the cleavage of the C-O bond in DMAPP, while the deprotonation/cyclization step determines the final product distribution. Hence, in the case of FtmPT1, the optimization of the necessary catalytic machinery guides the generation of the final product after formation of the intermediate carbocation.

Indexed as

DimethylallyltranstransferaseGene Expression Regulation, FungalHemiterpenesIndole AlkaloidsModels, MolecularNeopreneOrganophosphorus CompoundsPiperazinesProtein ConformationSubstrate Specificity3,3-dimethylallyl pyrophosphatebrevianamide FDimethylallyltranstransferaseFtmPT1 protein, Aspergillus fumigatusHemiterpenesIndole AlkaloidsNeopreneOrganophosphorus CompoundsPiperazinesprenyltryprostatin B

Identifiers

PMID25188320
PMCPMC4179596
OpenAlexW2330063076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.