Evidence map›Paper›PMID 25187957›Full record

ArticlePloS one2014

Population structure of clinical Pseudomonas aeruginosa from West and Central African countries.

Pascal Cholley, Roughyatou Ka, Christophe Guyeux, Michelle Thouverez, Nathalie Guessennd, Beniam Ghebremedhin, Thierry Frank, Xavier Bertrand, Didier Hocquet

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Molecular Typing ofDiagnostics (Basel, Switzerland) · 2024
    Article
  4. High incidence of carbapenemase-producingJAC-antimicrobial resistance · 2023
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  5. Emerging and re-emerging KPC-producing hypervirulentEmerging microbes & infections · 2022
    Article
  6. Review
  7. Occurrence ofInternational journal of molecular sciences · 2021
    Article
  8. A Potential High-Risk Clone ofFrontiers in microbiology · 2021
    Article
  9. Mobile Carbapenemase Genes inFrontiers in microbiology · 2021
    Review
  10. Genetic Diversity of Multidrug-ResistantFrontiers in microbiology · 2021
    Article
  11. Article
  12. Article
  13. Molecular epidemiology of Pseudomonas aeruginosa isolated from infected ICU patients: a French multicenter 2012-2013 study.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  14. BioMed research international · 2018
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pascal CholleyLaboratoire d'Hygiène Hospitalière, UMR 6249 CNRS Chrono-environnement, Université de Franche-Comté, Centre Hospitalier Universitaire, Besançon, France.
Roughyatou KaLaboratoire de Bactériologie, Centre Hospitalier National Universitaire de Fann, Dakar, Senegal.
Christophe GuyeuxDépartement d'Informatique des Systèmes Complexes, UMR 6174 CNRS, Université de Franche-Comté, Belfort, France.
Michelle ThouverezLaboratoire d'Hygiène Hospitalière, UMR 6249 CNRS Chrono-environnement, Université de Franche-Comté, Centre Hospitalier Universitaire, Besançon, France.
Nathalie GuessenndInstitut Pasteur, Abidjan, Ivory Coast.
Beniam GhebremedhinOtto-von-Guericke University, Magdeburg, Germany.
Thierry FrankInstitut Pasteur, Bangui, Central African Republic.
Xavier BertrandLaboratoire d'Hygiène Hospitalière, UMR 6249 CNRS Chrono-environnement, Université de Franche-Comté, Centre Hospitalier Universitaire, Besançon, France.
Didier HocquetLaboratoire d'Hygiène Hospitalière, UMR 6249 CNRS Chrono-environnement, Université de Franche-Comté, Centre Hospitalier Universitaire, Besançon, France; Centre de Ressources Biologiques Ferdinand Cabanne - Filière microbiologie, Centre Hospitalier Régional Universitaire, Besançon, France.

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundPseudomonas aeruginosa (PA) has a non-clonal, epidemic population with a few widely distributed and frequently encountered sequence types (STs) called 'high-risk clusters'. Clinical P. aeruginosa (clinPA) has been studied in all inhabited continents excepted in Africa, where a very few isolates have been analyzed. Here, we characterized a collection of clinPA isolates from four countries of West and Central Africa. METHODOLOGY: 184 non-redundant isolates of clinPA from hospitals of Senegal, Ivory Coast, Nigeria, and Central African Republic were genotyped by MLST. We assessed their resistance level to antibiotics by agar diffusion and identified the extended-spectrum β-lactamases (ESBLs) and metallo-β-lactamases (MBLs) by sequencing. The population structure of the species was determined by a nucleotide-based analysis of the entire PA MLST database and further localized on the phylogenetic tree (i) the sequence types (STs) of the present collection, (ii) the STs by continents, (iii) ESBL- and MBL-producing STs from the MLST database. PRINCIPAL

findingsWe found 80 distinct STs, of which 24 had no relationship with any known STs. 'High-risk' international clonal complexes (CC155, CC244, CC235) were frequently found in West and Central Africa. The five VIM-2-producing isolates belonged to CC233 and CC244. GES-1 and GES-9 enzymes were produced by one CC235 and one ST1469 isolate, respectively. We showed the spread of 'high-risk' international clonal complexes, often described as multidrug-resistant on other continents, with a fully susceptible phenotype. The MBL- and ESBL-producing STs were scattered throughout the phylogenetic tree and our data suggest a poor association between a continent and a specific phylogroup.

conclusionsESBL- and MBL-encoding genes are borne by both successful international clonal complexes and distinct local STs in clinPA of West and Central Africa. Furthermore, our data suggest that the spread of a ST could be either due to its antibiotic resistance or to features independent from the resistance to antibiotics.

Indexed as

GenotypePhylogenyAnti-Bacterial Agentsbeta-Lactamasesbeta-Lactam ResistanceCentral African RepublicCote d'IvoireHumansMolecular EpidemiologyMultilocus Sequence TypingNigeriaPseudomonas aeruginosaPseudomonas InfectionsSenegalAnti-Bacterial Agentsbeta-Lactamases

Identifiers

PMID25187957
PMCPMC4154784

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.