Evidence map›Paper›PMID 25187548›Full record

ArticleJournal of virology2014

Identification of a high-efficiency baculovirus DNA replication origin that functions in insect and mammalian cells.

Yueh-Lung Wu, Carol-P Wu, Yu-Hui Huang, Sheng-Ping Huang, Huei-Ru Lo, Hao-Shuo Chang, Pi-Hsiu Lin, Ming-Cheng Wu, Chia-Jung Chang, Yu-Chan Chao

Abstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. A Comprehensive Study of MicroRNA in Baculoviruses.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yueh-Lung WuDepartment of Entomology, National Taiwan University, Taipei, Taiwan.
Carol-P WuInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Yu-Hui HuangInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Sheng-Ping HuangInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Huei-Ru LoInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Hao-Shuo ChangInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Pi-Hsiu LinInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Ming-Cheng WuInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Chia-Jung ChangInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Yu-Chan ChaoInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, Taiwan Graduate Institute of Medical Sciences, Taipei Medical University, Taipei, Taiwan mbycchao@imb.sinica.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe p143 gene from Autographa californica multinucleocapsid nucleopolyhedrovirus (AcMNPV) has been found to increase the expression of luciferase, which is driven by the polyhedrin gene promoter, in a plasmid with virus coinfection. Further study indicated that this is due to the presence of a replication origin (ori) in the coding region of this gene. Transient DNA replication assays showed that a specific fragment of the p143 coding sequence, p143-3, underwent virus-dependent DNA replication in Spodoptera frugiperda IPLB-Sf-21 (Sf-21) cells. Deletion analysis of the p143-3 fragment showed that subfragment p143-3.2a contained the essential sequence of this putative ori. Sequence analysis of this region revealed a unique distribution of imperfect palindromes with high AT contents. No sequence homology or similarity between p143-3.2a and any other known ori was detected, suggesting that it is a novel baculovirus ori. Further study showed that the p143-3.2a ori can replicate more efficiently in infected Sf-21 cells than baculovirus homologous regions (hrs), the major baculovirus ori, or non-hr oris during virus replication. Previously, hr on its own was unable to replicate in mammalian cells, and for mammalian viral oris, viral proteins are generally required for their proper replication in host cells. However, the p143-3.2a ori was, surprisingly, found to function as an efficient ori in mammalian cells without the need for any viral proteins. We conclude that p143 contains a unique sequence that can function as an ori to enhance gene expression in not only insect cells but also mammalian cells. IMPORTANCE: Baculovirus DNA replication relies on both hr and non-hr oris; however, so far very little is known about the latter oris. Here we have identified a new non-hr ori, the p143 ori, which resides in the coding region of p143. By developing a novel DNA replication-enhanced reporter system, we have identified and located the core region required for the p143 ori. This ori contains a large number of imperfect inverted repeats and is the most active ori in the viral genome during virus infection in insect cells. We also found that it is a unique ori that can replicate in mammalian cells without the assistance of baculovirus gene products. The identification of this ori should contribute to a better understanding of baculovirus DNA replication. Also, this ori is very useful in assisting with gene expression in mammalian cells.

Indexed as

DNA ReplicationReplication OriginAnimalsBaculoviridaeCell LineDNA Mutational AnalysisInsectaMammalsSequence Deletion

Identifiers

PMID25187548
PMCPMC4249071

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.