Evidence map›Paper›PMID 25187368›Full record

ArticleDiabetes2015

Inflammation and hyperglycemia mediate Deaf1 splicing in the pancreatic lymph nodes via distinct pathways during type 1 diabetes.

Linda Yip, Rebecca Fuhlbrigge, Cariel Taylor, Remi J Creusot, Teppei Nishikawa-Matsumura, Chan C Whiting, Jill M Schartner, Rahima Akter, Matthias von Herrath, C Garrison Fathman

Open access · greenAbstract read
In one paragraph

Article in Diabetes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. The impact of donor diabetes on corneal transplant immunity.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Genome-wide DNA methylome alterations in acute coronary syndrome.International journal of molecular medicine · 2018
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Linda YipDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA lindayip@stanford.edu.
Rebecca FuhlbriggeDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Cariel TaylorDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Remi J CreusotDepartment of Medicine, Columbia Center for Translational Immunology and Naomi Berrie Diabetes Center, Columbia University Medical Center, New York, NY.
Teppei Nishikawa-MatsumuraDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Chan C WhitingDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Jill M SchartnerDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Rahima AkterDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Matthias von HerrathType 1 Diabetes Center, The La Jolla Institute for Allergy and Immunology, La Jolla, CA.
C Garrison FathmanDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA.
Stanford University · USColumbia University Irving Medical Center · USLa Jolla Institute for Immunology · US

Funding

Training Program in Adult and Pediatric RheumatologyT32AR050942 · NIAMS · STANFORD UNIVERSITY · PI LEWIS, DAVID BRAM, ROBINSON, WILLIAM H · 2005 to 2025
$6.6M
Deaf1 isoforms control changes in PTA expression in the NOD PLN during T1D pathogR01AI083628 · NIAID · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2010 to 2013
$1.6M
NIAID NIH HHS AI083628NIAID NIH HHS R01 AI083628NIAMS NIH HHS T32 AR050942
6 · The paper itself

Abstract

Peripheral tolerance is partially controlled by the expression of peripheral tissue antigens (PTAs) in lymph node stromal cells (LNSCs). We previously identified a transcriptional regulator, deformed epidermal autoregulatory factor 1 (Deaf1), that can regulate PTA expression in LNSCs of the pancreatic lymph nodes (PLNs). During the pathogenesis of type 1 diabetes (T1D), Deaf1 is spliced to form the dominant-negative isoform Deaf1-Var1. Here we show that Deaf1-Var1 expression correlates with the severity of disease in NOD mice and is reduced in the PLNs of mice that do not develop hyperglycemia. Inflammation and hyperglycemia independently drive Deaf1 splicing through activation of the splicing factors Srsf10 and Ptbp2, respectively. Inflammation induced by injection of activated splenocytes increased Deaf1-Var1 and Srsf10, but not Ptbp2, in the PLNs of NOD.SCID mice. Hyperglycemia induced by treatment with the insulin receptor agonist S961 increased Deaf1-Var1 and Ptbp2, but not Srsf10, in the PLNs of NOD.B10 and NOD mice. Overexpression of PTBP2 and/or SRSF10 also increased human DEAF1-VAR1 and reduced PTA expression in HEK293T cells. These data suggest that during the progression of T1D, inflammation and hyperglycemia mediate the splicing of DEAF1 and loss of PTA expression in LNSCs by regulating the expression of SRSF10 and PTBP2.

Indexed as

Alternative SplicingAgingAnimalsBlood GlucoseCell Cycle ProteinsDiabetes Mellitus, Type 1DNA-Binding ProteinsFemaleHEK293 CellsHumansHyperglycemiaInflammationIslets of LangerhansLymph NodesMiceMice, Inbred NODBlood GlucoseCELA1 protein, humanCell Cycle ProteinsDEAF1 protein, humanDeaf1 protein, mouseDNA-Binding ProteinsNerve Tissue ProteinsNuclear ProteinsPancreatic ElastasePolypyrimidine Tract-Binding ProteinPTBP2 protein, humanRepressor ProteinsRNA-Binding ProteinsSerine-Arginine Splicing FactorsSRSF10 protein, humanTranscription Factors

Identifiers

PMID25187368
PMCPMC4303971
OpenAlexW2137331401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.