Evidence map›Paper›PMID 25186755›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2014

Molecular dissection of the interaction between the AMPA receptor and cornichon homolog-3.

Natalie F Shanks, Ondrej Cais, Tomohiko Maruo, Jeffrey N Savas, Elena I Zaika, Caleigh M Azumaya, John R Yates, Ingo Greger, Terunaga Nakagawa

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Trafficking of the human NaProtein science : a publication of the Protein Society · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. eNeuro · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. CaThe Journal of physiology · 2021
    Article
  15. Review
  16. Article
  17. AMPA receptor structure and auxiliary subunits.The Journal of physiology · 2021
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Natalie F ShanksDepartment of Molecular Physiology and Biophysics and Department of Chemistry and Biochemistry and Neurosciences Graduate Programs, University of California, San Diego, La Jolla, California 92093.
Ondrej CaisMedical Research Council Laboratory of Molecular Biology, CB2 0QH, Cambridge, United Kingdom.
Tomohiko MaruoDepartment of Chemistry and Biochemistry and.
Jeffrey N SavasDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, and.ORCID http://orcid.org/0000-0002-8173-5580
Elena I ZaikaDepartment of Molecular Physiology and Biophysics and.
Caleigh M AzumayaDepartment of Molecular Physiology and Biophysics and.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, and.
Ingo GregerMedical Research Council Laboratory of Molecular Biology, CB2 0QH, Cambridge, United Kingdom.
Terunaga NakagawaDepartment of Molecular Physiology and Biophysics and Center for Structural Biology, Vanderbilt University, School of Medicine, Nashville, Tennessee 37232, Department of Chemistry and Biochemistry and terunaga.nakagawa@vanderbilt.edu.
Institute of Molecular Biology and Biophysics · RUMRC Laboratory of Molecular Biology · GBScripps Research Institute · USLaboratoire de Biochimie · FRUniversity of California San Diego · USVanderbilt University · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008326 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 1989 to 2020
$7.5M
Quantitative Proteome Analysis of Brain DevelopmentR01MH067880 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES III, JOHN R · 2003 to 2017
$7.1M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
Proteomic Profiling of CFTR Protein InteractionR01HL079442 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI BALCH, WILLIAM EDWARD, YATES III, JOHN R · 2005 to 2014
$4.6M
MICROSCOPY &IMAGE ANALYSIS OF UNSTAINED MACROMOLECULESR01GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 1985 to 2017
$4.3M
TRANSMISSION ELECTRON MICROSCOPE: STRUCTURAL &CELL BIOL: MEMBRANE TRANSPORT, GAS10RR020016 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2004
$2.0M
Molecular Anatomy of Mature and Immature Glutamate ReceptorsR01HD061543 · NICHD · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2010 to 2014
$1.5M
Quantitative Proteomic Approach to Identify the Mechanism of Alzheimer's DiseaseF32AG039127 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI SAVAS, JEFFREY NICHOLAS · 2011 to 2014
$117k
Medical Research Council MC_U105174197NCRR NIH HHS 1S10RR20016NCRR NIH HHS S10 RR020016NHLBI NIH HHS R01 HL079442NIA NIH HHS F32 AG039127NIA NIH HHS F32AG039127NICHD NIH HHS R01 HD061543NICHD NIH HHS R01HD061543NIGMS NIH HHS GM008320NIGMS NIH HHS GM033050NIGMS NIH HHS GM08326NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM033050NIGMS NIH HHS R37 GM033050NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32 GM008326NIMH NIH HHS R01 MH067880
6 · The paper itself

Abstract

Cornichon homologs (CNIHs) are AMPA-type glutamate receptor (AMPAR) auxiliary subunits that modulate AMPAR ion channel function and trafficking. Mechanisms underlying this interaction and functional modulation of the receptor complex are currently unclear. Here, using proteins expressed from mouse and rat cDNA, we show that CNIH-3 forms a stable complex with tetrameric AMPARs and contributes to the transmembrane density in single-particle electron microscopy structures. Peptide array-based screening and in vitro mutagenesis identified two clusters of conserved membrane-proximal residues in CNIHs that contribute to AMPAR binding. Because CNIH-1 binds to AMPARs but modulates gating at a significantly lower magnitude compared with CNIH-3, these conserved residues mediate a direct interaction between AMPARs and CNIHs. In addition, residues in the extracellular loop of CNIH-2/3 absent in CNIH-1/4 are critical for both AMPAR interaction and gating modulation. On the AMPAR extracellular domains, the ligand-binding domain and possibly a stretch of linker, connecting the ligand-binding domain to the fourth membrane-spanning segment, is the principal contact point with the CNIH-3 extracellular loop. In contrast, the membrane-distal N-terminal domain is less involved in AMPAR gating modulation by CNIH-3 and AMPAR binding to CNIH-3. Collectively, our results identify conserved residues in the membrane-proximal region of CNIHs that contribute to AMPAR binding and an additional unique segment in the CNIH-2/3 extracellular loop required for both physical interaction and gating modulation of the AMPAR. Consistent with the dissociable properties of binding and gating modulation, we identified a mutant CNIH-3 that preserves AMPAR binding capability but has attenuated activity of gating modulation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesFemaleHEK293 CellsHumansIon Channel GatingMaleMolecular Sequence DataProtein BindingRatsReceptors, AMPACnih3 protein, ratReceptors, AMPAAMPA receptorcomplexcornichongating modulationmolecular mechanismsingle particle EM

Identifiers

PMID25186755
PMCPMC4152608
OpenAlexW2032960191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.