Evidence map›Paper›PMID 25186406›Full record

ArticleMedical physics2014

Sampling strategies for subsampled segmented EPI PRF thermometry in MR guided high intensity focused ultrasound.

Henrik Odéen, Nick Todd, Mahamadou Diakite, Emilee Minalga, Allison Payne, Dennis L Parker

Abstract read
In one paragraph

Article in Medical physics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  4. Simultaneous proton resonance frequency TMagnetic resonance in medicine · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Henrik OdéenDepartment of Physics and Astronomy, University of Utah, Salt Lake City, Utah 84108 and Department of Radiology, University of Utah, Salt Lake City, Utah 84108.
Nick ToddDepartment of Radiology, University of Utah, Salt Lake City, Utah 84108.
Mahamadou DiakiteDepartment of Physics and Astronomy, University of Utah, Salt Lake City, Utah 84108 and Department of Radiology, University of Utah, Salt Lake City, Utah 84108.
Emilee MinalgaDepartment of Radiology, University of Utah, Salt Lake City, Utah 84108.
Allison PayneDepartment of Radiology, University of Utah, Salt Lake City, Utah 84108.
Dennis L ParkerDepartment of Radiology, University of Utah, Salt Lake City, Utah 84108.

Funding

Non-Invasive MRI-Guided HIFU for Breast Cancer TherapyR01CA172787 · NCI · UNIVERSITY OF UTAH · PI PARKER, DENNIS L · 2013 to 2017
$2.7M
Non-Invasive Image-Guided HIFU for Breast Cancer TherapyR01CA134599 · NCI · UNIVERSITY OF UTAH · PI PARKER, DENNIS L, ROEMER, ROBERT · 2008 to 2011
$2.4M
Improved MRI temperature imaging using a subject-specific biophysical modelR01EB013433 · NIBIB · UNIVERSITY OF UTAH · PI PARKER, DENNIS L · 2011 to 2014
$1.8M
MR Temperature Measurements in Fat During MR-Guided HIFU TreatmentsF32EB012917 · NIBIB · UNIVERSITY OF UTAH · PI TODD, NICHOLAS E. · 2011 to 2012
$96k
NCI NIH HHS R01 CA134599NCI NIH HHS R01 CA172787NIBIB NIH HHS F32 EB012917NIBIB NIH HHS F32 EB012917-02NIBIB NIH HHS R01 EB013433
6 · The paper itself

Abstract

purposeTo investigate k-space subsampling strategies to achieve fast, large field-of-view (FOV) temperature monitoring using segmented echo planar imaging (EPI) proton resonance frequency shift thermometry for MR guided high intensity focused ultrasound (MRgHIFU) applications.

methodsFive different k-space sampling approaches were investigated, varying sample spacing (equally vs nonequally spaced within the echo train), sampling density (variable sampling density in zero, one, and two dimensions), and utilizing sequential or centric sampling. Three of the schemes utilized sequential sampling with the sampling density varied in zero, one, and two dimensions, to investigate sampling the k-space center more frequently. Two of the schemes utilized centric sampling to acquire the k-space center with a longer echo time for improved phase measurements, and vary the sampling density in zero and two dimensions, respectively. Phantom experiments and a theoretical point spread function analysis were performed to investigate their performance. Variable density sampling in zero and two dimensions was also implemented in a non-EPI GRE pulse sequence for comparison. All subsampled data were reconstructed with a previously described temporally constrained reconstruction (TCR) algorithm.

resultsThe accuracy of each sampling strategy in measuring the temperature rise in the HIFU focal spot was measured in terms of the root-mean-square-error (RMSE) compared to fully sampled "truth." For the schemes utilizing sequential sampling, the accuracy was found to improve with the dimensionality of the variable density sampling, giving values of 0.65 °C, 0.49 °C, and 0.35 °C for density variation in zero, one, and two dimensions, respectively. The schemes utilizing centric sampling were found to underestimate the temperature rise, with RMSE values of 1.05 °C and 1.31 °C, for variable density sampling in zero and two dimensions, respectively. Similar subsampling schemes with variable density sampling implemented in zero and two dimensions in a non-EPI GRE pulse sequence both resulted in accurate temperature measurements (RMSE of 0.70 °C and 0.63 °C, respectively). With sequential sampling in the described EPI implementation, temperature monitoring over a 192×144×135 mm3 FOV with a temporal resolution of 3.6 s was achieved, while keeping the RMSE compared to fully sampled "truth" below 0.35 °C.

conclusionsWhen segmented EPI readouts are used in conjunction with k-space subsampling for MR thermometry applications, sampling schemes with sequential sampling, with or without variable density sampling, obtain accurate phase and temperature measurements when using a TCR reconstruction algorithm. Improved temperature measurement accuracy can be achieved with variable density sampling. Centric sampling leads to phase bias, resulting in temperature underestimations.

Indexed as

AlgorithmsEcho-Planar ImagingHigh-Intensity Focused Ultrasound AblationImaging, Three-DimensionalMagnetic Resonance Imaging, InterventionalPhantoms, ImagingTemperatureThermography

Identifiers

PMID25186406
PMCPMC4144162

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.