Evidence map›Paper›PMID 25184438›Full record

ArticleThe Journal of organic chemistry2014

Synthesis of methylerythritol phosphate analogues and their evaluation as alternate substrates for IspDF and IspE from Agrobacterium tumefaciens.

Sergiy G Krasutsky, Marek Urbansky, Chad E Davis, Christian Lherbet, Robert M Coates, C Dale Poulter

Abstract read
In one paragraph

Article in The Journal of organic chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sergiy G KrasutskyDepartment of Chemistry, University of Utah , Salt Lake City, Utah 84112, United States.
Marek Urbansky
Chad E Davis
Christian Lherbet
Robert M Coates
C Dale Poulter
University of Illinois Urbana-Champaign · USUniversity of Utah · US

Funding

STUDIES OF STEROL BIOSYNTHESISR01GM025521 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1985 to 2014
$5.9M
SPECIFICITY IN TERPENE AND STEROL BIOSYNTHESISR01GM013956 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI COATES, ROBERT M. · 1985 to 2006
$1.8M
NIGMS NIH HHS GM 13956NIGMS NIH HHS GM 25521NIGMS NIH HHS R01 GM013956NIGMS NIH HHS R01 GM025521
6 · The paper itself

Abstract

The methylerythritol phosphate biosynthetic pathway, found in most Bacteria, some parasitic protists, and plant chloroplasts, converts D-glyceraldehyde phosphate and pyruvate to isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), where it intersects with the mevalonate pathway found in some Bacteria, Archaea, and Eukarya, including the cytosol of plants. D-3-Methylerythritol-4-phosphate (MEP), the first pathway-specific intermediate in the pathway, is converted to IPP and DMAPP by the consecutive action of the IspD-H proteins. We synthesized five D-MEP analogues-D-erythritol-4-phosphate (EP), D-3-methylthrietol-4-phosphate (MTP), D-3-ethylerythritol-4-phosphate (EEP), D-1-amino-3-methylerythritol-4-phosphate (NMEP), and D-3-methylerythritol-4-thiolophosphate (MESP)-and studied their ability to function as alternative substrates for the reactions catalyzed by the IspDF fusion and IspE proteins from Agrobacterium tumefaciens, which covert MEP to the corresponding eight-membered cyclic diphosphate. All of the analogues, except MTP, and their products were substrates for the three consecutive enzymes.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsCatalysisEnzyme AssaysErythritolHemiterpenesMagnetic Resonance SpectroscopyMolecular StructureMultienzyme ComplexesOrganophosphorus CompoundsPhosphotransferases (Alcohol Group Acceptor)Substrate SpecificitySugar Phosphates2-C-methylerythritol 4-phosphate3,3-dimethylallyl pyrophosphateBacterial ProteinsD-1-amino-3-methylerythritol-4-phosphateD-3-methylerythritol-4-thiolophosphateErythritolHemiterpenesisopentenyl pyrophosphateMultienzyme ComplexesOrganophosphorus CompoundsPhosphotransferases (Alcohol Group Acceptor)Sugar Phosphates

Identifiers

PMID25184438
PMCPMC4184463
OpenAlexW2312494765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.