Evidence map›Paper›PMID 25183518›Full record

ArticleNucleic acids research2014

Processing of the seven valine tRNAs in Escherichia coli involves novel features of RNase P.

Ankit Agrawal, Bijoy K Mohanty, Sidney R Kushner

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Suppression of theRNA (New York, N.Y.) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Regulation of mRNA decay inCritical reviews in biochemistry and molecular biology · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Bacterial ribonucleases and their roles in RNA metabolism.Critical reviews in biochemistry and molecular biology · 2019
    Review
  12. Article
  13. Review
  14. TheJournal of bacteriology · 2017
    Article
  15. Article
  16. Article
  17. Bacterial transfer RNAs.FEMS microbiology reviews · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ankit AgrawalDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Bijoy K MohantyDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.
Sidney R KushnerDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA skushner@uga.edu.
University of Georgia · US

Funding

Analysis of E. coli ribonucleases and RNA metabolismR01GM081554 · NIGMS · UNIVERSITY OF GEORGIA · PI KUSHNER, SIDNEY R. · 2008 to 2020
$3.8M
The Role of Polyadenylation in RNA TurnoverR01GM057220 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI KUSHNER, SIDNEY R. · 1999 to 2012
$3.5M
The Role of Polyadenylation in RNA TurnoverR56GM057220 · NIGMS · UNIVERSITY OF GEORGIA · PI KUSHNER, SIDNEY R. · 2007 to 2007
$348k
NIGMS NIH HHS GM57220NIGMS NIH HHS GM81554
6 · The paper itself

Abstract

Here we report that RNase P is required for the initial separation of all seven valine tRNAs from three distinct polycistronic transcripts (valV valW, valU valX valY lysY and lysT valT lysW valZ lysY lysZ lysQ). Particularly significant is the mechanism by which RNase P processes the valU and lysT polycistronic transcripts. Specifically, the enzyme initiates processing by first removing the Rho-independent transcription terminators from the primary valU and lysT transcripts. Subsequently, it proceeds in the 3' → 5' direction generating one pre-tRNA at a time. Based on the absolute requirement for RNase P processing of all three primary transcripts, inactivation of the enzyme leads to a > 4-fold decrease in the levels of both type I and type II valine tRNAs. The ability of RNase P to initiate tRNA processing at the 3' ends of long primary transcripts by endonucleolytically removing the Rho-independent transcription terminator represents a previously unidentified function for the enzyme, which is responsible for generating the mature 5' termini of all 86 E. coli tRNAs. RNase E only plays a very minor role in the processing of all three valine polycistronic transcripts.

Indexed as

Gene Expression Regulation, BacterialRNA Processing, Post-TranscriptionalEndoribonucleasesEscherichia coliEscherichia coli ProteinsExoribonucleasesMultigene FamilyMutationOperonRibonuclease PRNA, BacterialRNA CleavageRNA PrecursorsRNA, Transfer, ArgRNA, Transfer, ValTranscription, Genetic4.5S RNAEndoribonucleasesEscherichia coli ProteinsExoribonucleasesribonuclease ERibonuclease Pribonuclease P, E coliribonuclease PHRNA, BacterialRNA PrecursorsRNA, Transfer, ArgRNA, Transfer, Val

Identifiers

PMID25183518
PMCPMC4176162
OpenAlexW2131249162

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.