Evidence map›Paper›PMID 25183009›Full record

ArticleThe Journal of biological chemistry2014

Allosteric inhibition of Epac: computational modeling and experimental validation to identify allosteric sites and inhibitors.

Loren M Brown, Kathleen E Rogers, Nakon Aroonsakool, J Andrew McCammon, Paul A Insel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Targeting the Small GTPase Superfamily through Their Regulatory Proteins.Angewandte Chemie (International ed. in English) · 2020
    Review
  7. Review
  8. Review
  9. Article
  10. Selective small-molecule EPAC activators.Biochemical Society transactions · 2019
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. The role of Epac in the heart.Cellular and molecular life sciences : CMLS · 2017
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Loren M BrownFrom the Departments of Pharmacology.
Kathleen E RogersFrom the Departments of Pharmacology.
Nakon AroonsakoolFrom the Departments of Pharmacology.
J Andrew McCammonFrom the Departments of Pharmacology, Chemistry and Biochemistry, and the Howard Hughes Medical Institute, University of California at San Diego, La Jolla, California 92093.
Paul A InselFrom the Departments of Pharmacology, Medicine and pinsel@ucsd.edu.
University of California, San Diego · USHoward Hughes Medical Institute · US

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
THEORY OF BIOMOLECULAR DIFFUSIONR01GM031749 · NIGMS · UNIVERSITY OF HOUSTON · PI HUBER, GARY ALEXANDER, MCCAMMON, JAMES ANDREW · 1985 to 2022
$7.8M
MOLECULAR BIOLOGICAL APPROACHES TO ENDOCRINOLOGYT32DK007541 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GAULTON, KYLE JEFFRIE, MAJITHIA, AMIT · 1987 to 2022
$4.5M
Howard Hughes Medical InstituteNIDDK NIH HHS 5T32DK007541-27NIDDK NIH HHS T32 DK007541NIGMS NIH HHS GM31749NIGMS NIH HHS R01 GM031749NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

Epac, a guanine nucleotide exchange factor for the low molecular weight G protein Rap, is an effector of cAMP signaling and has been implicated to have roles in numerous diseases, including diabetes mellitus, heart failure, and cancer. We used a computational molecular modeling approach to predict potential binding sites for allosteric modulators of Epac and to identify molecules that might bind to these regions. This approach revealed that the conserved hinge region of the cyclic nucleotide-binding domain of Epac1 is a potentially druggable region of the protein. Using a bioluminescence resonance energy transfer-based assay (CAMYEL, cAMP sensor using YFP-Epac-Rluc), we assessed the predicted compounds for their ability to bind Epac and modulate its activity. We identified a thiobarbituric acid derivative, 5376753, that allosterically inhibits Epac activity and used Swiss 3T3 and HEK293 cells to test the ability of this compound to modulate the activity of Epac and PKA, as determined by Rap1 activity and vasodilator-stimulated phosphoprotein phosphorylation, respectively. Compound 5376753 selectively inhibited Epac in biochemical and cell migration studies. These results document the utility of a computational approach to identify a domain for allosteric regulation of Epac and a novel compound that prevents the activation of Epac1 by cAMP.

Indexed as

Allosteric SiteAnimalsCell MovementCell SurvivalComputer SimulationCyclic AMPFluorescence Resonance Energy TransferGuanine Nucleotide Exchange FactorsHEK293 CellsHumansLigandsMiceMolecular Dynamics SimulationNIH 3T3 CellsProtein Structure, TertiaryRatsCyclic AMPEpac protein, mouseGuanine Nucleotide Exchange FactorsLigandsRAPGEF3 protein, humanRapgef3 protein, ratThiobarbituric Acid Reactive SubstancesAllosteric RegulationCyclic AMP (cAMP)Drug DiscoveryEpacGuanine Nucleotide Exchange Factor (GEF)Molecular DynamicsVirtual Screening

Identifiers

PMID25183009
PMCPMC4200268
OpenAlexW2059672041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.