Evidence map›Paper›PMID 25182653›Full record

ArticleAntimicrobial agents and chemotherapy2014

Random mutagenesis of the multidrug transporter AcrB from Escherichia coli for identification of putative target residues of efflux pump inhibitors.

Sabine Schuster, Samay Kohler, Annika Buck, Christine Dambacher, Armin König, Jürgen A Bohnert, Winfried V Kern

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Deep dive into a drug pump.Nature chemical biology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. An outbreak of extensively drug-resistant and hypervirulentFrontiers in cellular and infection microbiology · 2022
    Article
  10. Article
  11. Review
  12. Article
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sabine SchusterCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany sabine.schuster@uniklinik-freiburg.de.
Samay KohlerCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany Department of Biology, Eberhard Karls-University, Tübingen, Germany.
Annika BuckCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany.
Christine DambacherCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany.
Armin KönigInstitute for Environmental Health Sciences, Albert-Ludwigs-University, Freiburg, Germany.
Jürgen A BohnertCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany Institute of Medical Microbiology, Jena University Hospital, Jena, Gemany.
Winfried V KernCenter for Infectious Diseases and Travel Medicine, University Hospital Freiburg, and Department of Medicine, Albert-Ludwigs-University, Freiburg, Germany.
Jena University Hospital · DEUniversity of Freiburg · DEUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efflux is an important mechanism of bacterial multidrug resistance (MDR), and the inhibition of MDR pumps by efflux pump inhibitors (EPIs) could be a promising strategy to overcome MDR. 1-(1-Naphthylmethyl)-piperazine (NMP) and phenylalanine-arginine-β-naphthylamide (PAβN) are model EPIs with activity in various Gram-negative bacteria expressing AcrB, the major efflux pump of Escherichia coli, or similar homologous pumps of the resistance-nodulation-cell division class. The aim of the present study was to generate E. coli AcrB mutants resistant to the inhibitory action of the two model EPIs and to identify putative EPI target residues in order to better understand mechanisms of pump inhibition. Using an in vitro random mutagenesis approach focusing on the periplasmic domain of AcrB, we identified the double mutation G141D N282Y, which substantially compromised the synergistic activity of NMP with linezolid, was associated with similar intracellular linezolid concentrations in the presence and absence of NMP, and did not impair the intrinsic MICs of various pump substrates and dye accumulation. We propose that these mutations near the outer face of the distal substrate binding pocket reduce NMP trapping. Other residues found to be relevant for efflux inhibition by NMP were G288 and A279, but mutations at these sites also changed the susceptibility to several pump substrates. Unlike with NMP, we were unable to generate AcrB periplasmic domain mutants with resistance or partial resistance to the EPI activity of PAβN, which is consistent with the modes of action of PAβN differing from those of NMP.

Indexed as

AcetamidesAnti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli ProteinsLinezolidMicrobial Sensitivity TestsMutagenesis, Site-DirectedMutationOxazolidinonesPromoter Regions, GeneticProtein Structure, TertiaryAcetamidesAcrB protein, E coliAnti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsEscherichia coli ProteinsLinezolidOxazolidinones

Identifiers

PMID25182653
PMCPMC4249408
OpenAlexW2128463969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.