Evidence map›Paper›PMID 25182531›Full record

ArticleMolecular and cellular biology2014

Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly.

Bala Bharathi Burugula, Célia Jeronimo, Rakesh Pathak, Jeffery W Jones, François Robert, Chhabi K Govind

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  15. Article
  16. Article
  17. The pol II CTD: new twists in the tail.Nature structural & molecular biology · 2016
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bala Bharathi BurugulaDepartment of Biological Sciences, Oakland University, Rochester, Michigan, USA.
Célia JeronimoInstitut de recherches cliniques de Montréal, Montréal, Québec, Canada.
Rakesh PathakDepartment of Biological Sciences, Oakland University, Rochester, Michigan, USA.
Jeffery W JonesDepartment of Biological Sciences, Oakland University, Rochester, Michigan, USA.
François RobertInstitut de recherches cliniques de Montréal, Montréal, Québec, Canada Département de Médecine, Faculté de Médecine, Université de Montréal, Montréal, Québec, Canada.
Chhabi K GovindDepartment of Biological Sciences, Oakland University, Rochester, Michigan, USA govind@oakland.edu.

Funding

Mechanisms of RSC recruitment and its role in transcriptionR01GM095514 · NIGMS · OAKLAND UNIVERSITY · PI GOVIND, CHHABI K · 2011 to 2015
$1.5M
CIHR MOP-133648NIGMS NIH HHS GM095514NIGMS NIH HHS R01 GM095514
6 · The paper itself

Abstract

Spt6 is a multifunctional histone chaperone involved in the maintenance of chromatin structure during elongation by RNA polymerase II (Pol II). Spt6 has a tandem SH2 (tSH2) domain within its C terminus that recognizes Pol II C-terminal domain (CTD) peptides phosphorylated on Ser2, Ser5, or Try1 in vitro. Deleting the tSH2 domain, however, only has a partial effect on Spt6 occupancy in vivo, suggesting that more complex mechanisms are involved in the Spt6 recruitment. Our results show that the Ser2 kinases Bur1 and Ctk1, but not the Ser5 kinase Kin28, cooperate in recruiting Spt6, genome-wide. Interestingly, the Ser2 kinases promote the association of Spt6 in early transcribed regions and not toward the 3' ends of genes, where phosphorylated Ser2 reaches its maximum level. In addition, our results uncover an unexpected role for histone deacetylases (Rpd3 and Hos2) in promoting Spt6 interaction with elongating Pol II. Finally, our data suggest that phosphorylation of the Pol II CTD on Tyr1 promotes the association of Spt6 with the 3' ends of transcribed genes, independently of Ser2 phosphorylation. Collectively, our results show that a complex network of interactions, involving the Spt6 tSH2 domain, CTD phosphorylation, and histone deacetylases, coordinate the recruitment of Spt6 to transcribed genes in vivo.

Indexed as

Cyclin-Dependent KinasesGene Expression Regulation, FungalGenes, FungalHistone ChaperonesHistone DeacetylasesHistonesNuclear ProteinsPhosphorylationProtein Interaction MapsProtein KinasesProtein Structure, TertiaryRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsTranscription, GeneticCTDK-I protein complex, S cerevisiaeCyclin-Dependent KinasesHistone ChaperonesHistone DeacetylasesHistonesHOS2 protein, S cerevisiaeNuclear ProteinsProtein KinasesRNA Polymerase IIRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSGV1 protein, S cerevisiaeSPT6 protein, S cerevisiaeTranscriptional Elongation Factors

Identifiers

PMID25182531
PMCPMC4248711

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.